BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477291
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79790.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1103 0.0
> AT1G79790.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr1:30016902-30018231 REVERSE
LENGTH=868
Length=868
Score = 1103 bits (597), Expect = 0.0
Identities = 743/808 (92%), Gaps = 31/808 (4%)
Strand=Plus/Plus
Query 3 GGCGGCGGTGATGCATACATCGACGGAATTCATCAATCTGAAACCCAACATCTGGAAGAA 62
|||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 51 GGCGGCGGCGATGCACACATCGGCGGAATTCATCAATCTGAAACCCAACATGTGGAAGAA 110
Query 63 G---CCTGATCGGGCCTCGGGTTCTTGCTGTCT--G--G--GCA---GTGATGATATCTC 110
| |||| |||||||||||||||||||||||| | | ||| ||||||| |||||
Sbjct 111 GAATCCTGTTCGGGCCTCGGGTTCTTGCTGTCTGGGCAGCAGCAGTGGTGATGAAATCTC 170
Query 111 TCGGAAAAGGAAGCTTCCGATTCTCCTCTTCGACGTCATGGACACCATCGTCCGTGACCC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCGGAAAAGGAAGCTTCCGATTCTCCTCTTCGACGTCATGGACACCATCGTCCGTGACCC 230
Query 171 CTTTTACCACGACGTTCCGGCCTTCTTCGGAATGCCAATGAAGGAACTACTAGAGTGCAA 230
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 231 CTTTTACCAGGACGTTCCGGCCTTCTTCGGAATGCCAATGAAGCAACTACTAGAGTGCAA 290
Query 231 GCACCCGATGGCCTGGATCGAATTTGAAAAGGGTTTGATTGACGAGGAGGAGCTTGCAAG 290
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 291 GCACCCGATGGTCTGGATCGAATTTGAAAAGGGTTTGATTGATGAGGAGGAGCTTGCTAG 350
Query 291 AAAGTTCTTTATAGATGGGAGGGACTTTGATTTGGAAGGGCTTAAGGATTGCATGAGGTC 350
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 351 AAACTTCTTTATAGATGGGAGGGATTTTGATTTGGAAGGGCTTAAGGAGTGCATGAGGTC 410
Query 351 AGGATACTCCTACTTAGATGGCATGCAAGAGCTTCTTCACACTTTGGCTGCTGACGACTT 410
||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 411 AGGTTACTCCTACTTAGATGGCATGCAAGAGCTCCTTCAAACTTTGGCAGCTGACGACTT 470
Query 411 CGAGATTCATGCTTTCACTAACTATCCCATCTGGTACAACATTATCGAAGACAAGTTAAA 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CGAGATTCATGCTTTCACTAACTATCCCATCTGGTACAACATTATCGAAGACAAGTTAAA 530
Query 471 GCTCTCTGCCTACTTATCATGGACGTTTTGTTCCTGTATTTCTGGGAAGAGAAAGCCTGA 530
||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 531 GCTTTCTGCCTACTTATCATGGACGTTTTGCTCCTGTATTGCTGGGAAGAGAAAGCCTGA 590
Query 531 TCCAGACTTCTATCTCGAGGTTGTGGGACATCTCGGAGTTGAACCTTGCCACTGTATATT 590
|||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 591 TCCAGAGTTCTACCTCGAGGTTGTGGGACACCTCGGAGTTGAACCTTGCGACTGTATATT 650
Query 591 CATTGATGACAGGCCAACCAACGTCAAGTGTGCAATAGAGATAGGGATGGGTGGGTTATG 650
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 651 CATTGATGACAGGCCAACCAACGTCAAGTGTGCTATAGAGATAGGGATGGGTGGGTTATG 710
Query 651 TTTTCAGAATGCAGAGTCGCTCGCTAAGGATCTCTCACATCTAGGGATCGACCTCTCTGT 710
||| |||||||||| ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 711 CTTTGAGAATGCAGATTCGCTCGCTAAGGATCTCTCAGATCTAGGGATCAACGTCTCTGT 770
Query 711 ACCCAA-T-AT-AT-G-A-TT----------GCATC-T-TGAA-TGTATTGCATCAGAGA 751
|||||| | || || | | || ||||| | | || ||||||||||||||||
Sbjct 771 ACCCAAATTATGATTGTAATTTCATCACAACGCATCATCTTAAATGTATTGCATCAGAGA 830
Query 752 AATACTCATAAGAGAAATACATTGTTTT 779
|||||||| |||||||||||||||||||
Sbjct 831 AATACTCAAAAGAGAAATACATTGTTTT 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5