BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477315
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01980.3 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 891 0.0
> AT3G01980.3 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:327615-329031 REVERSE LENGTH=1221
Length=1221
Score = 891 bits (482), Expect = 0.0
Identities = 605/661 (92%), Gaps = 21/661 (3%)
Strand=Plus/Plus
Query 410 AGGAAAGATGCAGGACTTTCTTCAAGTTTCTCAAGATGAGTTCAACAGGATCTCAAAGAT 469
||||||| |||||||| |||||||||| ||||||||||||||| |||| ||| |||||||
Sbjct 579 AGGAAAGGTGCAGGACATTCTTCAAGTCTCTCAAGATGAGTTCCACAGAATCACAAAGAT 638
Query 470 CAATCTCACCGCTCCATGGTTTCTCTTGAAGGCTGTAGCCACAAGGATGAAAGACCATGG 529
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 639 CAATCTCACCGCTCCATGGTTTCTCTTGAAGGCTGTAGCCACAAGGATGAAGGACCATGG 698
Query 530 ATCAGGAGGCTCCATTGTCTTCATGGCCACTATCGCCAGCGGTGAGAGGGTGCTTTACCC 589
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 699 ATCAGGAGGCTCCATTGTCTTCATGGCCACTATCGCCAGCGGAGAGAGGGCGCTTTACCC 758
Query 590 TGGAGCTGATGCCTACGCTACTACCTCTGCTGCCATTCATCAGCTTGTTCGGGCATCAGC 649
||| ||||||||||||||| | || ||||| || ||||| ||||| || |||||||||||
Sbjct 759 TGGCGCTGATGCCTACGCTTCAACTTCTGCCGCTATTCACCAGCTCGTCCGGGCATCAGC 818
Query 650 CATGAGTCTAGGGAAGCACAAGATACGGGTCAACATGATCTCTAGAGGGCTGCATCTGGA 709
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 CATGAGTCTCGGGAAGCACAAGATACGGGTCAACATGATCTCTAGAGGGCTGCATCTGGA 878
Query 710 AGATGAATATCCAGCTTCTGTCGGAAGAGACCGAGCGCAGAAGCTGGTCAAGGACGCTGC 769
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 879 TGATGAGTATACAGCTTCTGTGGGAAGAGACCGAGCGCAGAAGCTGGTCAAGGACGCTGC 938
Query 770 ACCCCTCGGCCAGTGGCTCAACCCAGACACAGACCTCTACTCCACTGTTATTTACTTGAT 829
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 939 ACCCCTCGGCCAGTGGCTCAACCCGGACACAGACCTCTACTCCACTGTTATCTACTTGAT 998
Query 830 CAGCGACGGCTCACGCTTCATGACAGGCACCACTGTCTTGGTGGATGGAGCGCAGTCCCT 889
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CAGCGATGGCTCACGCTTCATGACAGGCACCACTGTCTTGGTGGATGGAGCGCAGTCCCT 1058
Query 890 TACGCGACCCCGTCTCAAATCCTACATGTGATCAACACATAGTATTAT-A-A-TTCTATG 946
||||||||||||||||||||||||||||||||||| | ||||||||| | | |||||||
Sbjct 1059 TACGCGACCCCGTCTCAAATCCTACATGTGATCAATGCCTAGTATTATTATAATTCTATG 1118
Query 947 TTGTGTGTGTTTACTGTAAAAAGTGAACATGAATCAAGTTTGAATAACTTTGGAGGGATG 1006
|||||||| | |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1119 TTGTGTGT----A----AAAA-GTGAATATGAATCAAGTTTGAATAACTATGGAGGGATG 1169
Query 1007 AGTAATCCATCCATCGAAGCAAAGCAATGATTATATACTTTTGACAAATATAGAAAAAAG 1066
| |||||||| | | || ||||||||||||||||||||||| ||||||| ||||
Sbjct 1170 AATAATCCAT-----G--G-AAT-CAATGATTATATACTTTTGACAAGTATAGAAGAAAG 1220
Query 1067 C 1067
|
Sbjct 1221 C 1221
Score = 453 bits (245), Expect = 2e-126
Identities = 285/304 (94%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 111 TTTGGGAAAATGGAAAATCCGGCCAAGAGAGTGTTGATGACATCCAACGGCGACCAGGTT 170
||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 190 TTTGGCAAAATGGAAAATCCGGCGAAGAGAGTGTTGATGACATCCAACGGCGACGAGGTG 249
Query 171 TCCCGAAACATCGCTTTCCATCTAGCCAAACACGGTTGCAAGTTGGTACTGATGGGAAAT 230
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 250 TCCCGAAACATCGCTTTCCATCTAGCCAAACACGGTTGCAAGTTGGTAATGATGGGAAAT 309
Query 231 GAGTCTTCTCTAAGGAGCATTGTAGACAAGATTAGAGATTCCATTGAGGGAGCCTTCCCT 290
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GAGGGTTCCCTAAGGAGCATTGTAGACAAGATTAGAGATTCCATTGAGGGAGCCTTCCCT 369
Query 291 GCCGATGTGATTGCACTCGACATGGAATCTGATTCTGAAGATGCTTTCCATGCCGCTGTC 350
|||||||| || |||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 370 GCCGATGTTATAGCACTCGACATGGAATCTGACTCTGAAGTTGCTTTTCATGCCGCTGTC 429
Query 351 CAAAAGGCATGG-A-CTTGTTCCGGCTATTTCGATGCTTTTCTCAACTCTTATTCCTACC 408
|||||||||||| | ||| | ||||| |||||||||||||||||||||||||| ||||||
Sbjct 430 CAAAAGGCATGGGAACTT-T-CCGGCCATTTCGATGCTTTTCTCAACTCTTATACCTACC 487
Query 409 AAGG 412
||||
Sbjct 488 AAGG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5