BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477338 Length=2228 Score E Sequences producing significant alignments: (Bits) Value AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrate... 2828 0.0 > AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extraterminal domain protein 10 | chr3:275411-278785 REVERSE LENGTH=2288 Length=2288 Score = 2828 bits (1531), Expect = 0.0 Identities = 1980/2187 (91%), Gaps = 69/2187 (3%) Strand=Plus/Plus Query 68 tctgtctctGCTCCAGAAGATTTACGCTTCTGCCTCGGTTCTCTTGCTTCCGCTTCGGTT 127 ||||| |||||| ||||||||||||||| | ||||||||||||| |||| ||| ||||| Sbjct 144 TCTGTTTCTGCTGGAGAAGATTTACGCTTGTTCCTCGGTTCTCTTACTTCTGCTCCGGTT 203 Query 128 CGATCGCTTGCTCAGTATTTCGAGTCGGTTAGTTCCGAATT-GGTGGGCG--AT-ATGAC 183 |||||||||||| ||| |||||||| |||| | | | || |||||||| || ||||| Sbjct 204 CGATCGCTTGCTAAGTGTTTCGAGTTGGTTCG---C-ACTTCGGTGGGCGATATCATGAC 259 Query 184 TGTGAGGAACGGTGGTTTCCCAGGAGATTACT-ATCGTACCAGCTTTGACACTCCTGGCG 242 |||||||||||||||||||||||||||||| | |||||| ||| |||||| |||| |||| Sbjct 260 TGTGAGGAACGGTGGTTTCCCAGGAGATTA-TAATCGTAACAGTTTTGACTCTCCCGGCG 318 Query 243 GCTGTGATGATAGCCCTAATGCTTCC---GAGGATGAAACTTTTGGTGTCCCGAGAATGG 299 |||||||||||||||| ||||||||| || |||||||||||||||||||||||||| | Sbjct 319 GCTGTGATGATAGCCCCAATGCTTCCAAGGATGATGAAACTTTTGGTGTCCCGAGAATAG 378 Query 300 TTTTACCCTTGTCTGACTTGTCATCATCGGAAAGGAAAAAGCT-GATTCATACGCTTCGT 358 |||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||| Sbjct 379 TTTTACCCTTGTCTGACTTGTCATCATCAGAAAGGAGAAAG-TGGATTCATACGCTTCGT 437 Query 359 CAGGAGCTGGAACAAATACGCTCCTTTCAGAAGAGTCTTGTGGA-C--CTTCCTATGTCT 415 ||||||||||||||| |||| ||||||||||||||| ||| ||| | |||||||| ||| Sbjct 438 CAGGAGCTGGAACAACTACGGTCCTTTCAGAAGAGTGTTGGGGACCTTCTTCCTATATCT 497 Query 416 AACATTG----T--TACACCTGTGAGTAATAATGTGTCTCGACCCAAGAGTTTTAGAATG 469 || |||| | |||||||| | | |||||||||||| |||||||||||| ||||| Sbjct 498 AAGATTGTTACTAGTACACCTG-CA--AGTAATGTGTCTCGCCCCAAGAGTTTTGGAATG 554 Query 470 GCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTTTCAGCAACCAAACCTGAG 529 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 555 TCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTCACAGCAACCAAACCAGAG 614 Query 530 CCAGTCACCACTTCTACAATGCTTCGGATGAAGCAATGTGAGACCCTCCTCAAACGATTG 589 |||||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||| Sbjct 615 CCAGTCACCACTTCCACTATGCTTCGGATGAAGCAATGTGAGAGCCTCCTTAAACGATTG 674 Query 590 ATGTCCCAACAGCACTGCTGGCTCTTTAATACCCCTGTTGATGTGGTTAAGCTCAACATT 649 ||||| || ||||| || |||||||||||||||||||| || || || |||||||||||| Sbjct 675 ATGTCGCAGCAGCATTGTTGGCTCTTTAATACCCCTGTGGACGTCGTCAAGCTCAACATT 734 Query 650 CCTGATTATTTCACTATTATCAAACAGCCTATGGATTTAGGAACTG-TAAAGAGCAAGTT 708 |||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||| Sbjct 735 CCTGATTATTTCACCATTATCAAACATCCTATGGATTTAGGAACTGTTAAA-AGCAAGTT 793 Query 709 AACTTCCGGCACCTATTCAAGCCCATCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 768 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 794 AACTTCCGGCACGTATTCAAGCCCTTCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 853 Query 769 CAATGCAATGACATATAACCCGTCAGATAATAATGTTTATCGTTTCGCTGATACACTCAG 828 |||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 854 CAATGCTATGACTTATAACCCGTCAGATAATAATGTGTATCGCTTCGCTGATACTCTCAG 913 Query 829 CAAGTTTTTTGAAGTGAGGTGGAAAACTTTTAATAAGAAGTCATCCGGAACCAAATCTGA 888 |||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||| Sbjct 914 CAAGTTTTTTGAAGTGAGATGGAAAACTATCGAGAAGAAGTCATCCGGAACCAAATCTGA 973 Query 889 ACCAAGTAACTTGGGTACTCATGCTCACAAAGATATTGCAATGCCTGAGCCTCTGGCTAA 948 |||||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||||| Sbjct 974 ACCAAGTAACTTGGCTACTCTTGCTCACAAAGATATTGCGATACCTGAGCCTGTGGCTAA 1033 Query 949 GAAGAGAAAGATGAATGCTCTCAACCATGACAGCCTCTTAGAGCCTGCTAAACGGGTTAT 1008 ||||||||||||||||||| | || | | |||||||||||||||||||||| |||||||| Sbjct 1034 GAAGAGAAAGATGAATGCTGTGAAACGTAACAGCCTCTTAGAGCCTGCTAAGCGGGTTAT 1093 Query 1009 GACAGATGAGGATAGAGTTAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCGGT 1068 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1094 GACAGATGAGGATAGAGTAAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCTGT 1153 Query 1069 ACAGATAATAAATTTCCTGAGAGGTCACAGCTCCAAGGAAGGGAGATCTGGAGATGATGA 1128 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1154 ACAGATAATAAATTTCCTGAGAGATCACAGCTCCAAGGAAGAGAGATCTGGAGATGATGA 1213 Query 1129 GATAGAGATTGACATTAATGATCTCACTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1188 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1214 GATAGAGATTGACATCAATGATCTCAGTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1273 Query 1189 TGATGAGTTTTTGCGAGAAAATCAAAAGAAAGATGT-AAACGGTGAACCCTGTGAGTTAG 1247 |||||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||| Sbjct 1274 TGATGAGTTTCTGCGAGAAAATCAAAAGAAAGAT-TCAAACGGTGAACCCTGTGTGTTAG 1332 Query 1248 AGCTTTTAGATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTATGGTGGGAGCGAAA 1307 |||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||| Sbjct 1333 AGCTTTTACATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTGTGATGGGAGTGAAT 1392 Query 1308 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTAGATCTCACATCCCATCTG 1367 |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| Sbjct 1393 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTATATCTCACATCTCAACTG 1452 Query 1368 TCAGGACAGAAAAAGATTCCGTCGGCGGATTAAATCAGCTGGAAGATGCATCCAAAGGG- 1426 |||| |||||||||||||||||||| ||||| |||||| ||||||||||||||| |||| Sbjct 1453 TCAGAACAGAAAAAGATTCCGTCGGTGGATTGAATCAGATGGAAGATGCATCCAGAGGGA 1512 Query 1427 AG----G-CTAATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCGAATGAGA 1481 || | || ||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1513 AGCTAAGTCTTATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCAAAAGAGA 1572 Query 1482 AGCAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAGATCGATTTGCGGATA 1541 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1573 AGGAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAAATCGATTTGCGGATA 1632 Query 1542 TAATCTTGAAGGCTAAAGAGATAACTCTTAATCAGAATGAGAAACGCGACCCAGAGAAAC 1601 |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1633 TAATCTTGAAGGCTCAAGAGATAACTCTTAATCAGAATGAGAAACGAGACCCAGAGACAC 1692 Query 1602 TGCGACGTGAGAAGGAAGAACTCGAATTGCAAaagaagaaagaaaaagcacggttacaag 1661 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1693 TGCAACGTGAGAAGGAAGAACTGGAATTGCAAAAGAAGAAAGAAAAAGCACGGTTACAAG 1752 Query 1662 cagaagccaaggaagctgaagaagcttgtagaaaagCTGAGGCACGAGCTGCAGTTGAAG 1721 |||||||||||||||||||||||||| |||||||||||||||||| | || | | Sbjct 1753 CAGAAGCCAAGGAAGCTGAAGAAGCTCGTAGAAAAGCTGAGGCAC-A-----AG---A-G 1802 Query 1722 CTGCGGCTGAGGCTAAGAGGAAACTGGAACTTGAAAGAAAAGCAGCACGGCAGGCATTGC 1781 || | | | |||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1803 --GC---T-A----A-GAGGAAACTGGAACTTGAAAGAGAAGCAGCCCGGCAGGCATTGC 1851 Query 1782 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAGC 1841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1852 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAAC 1911 Query 1842 TGCTTAAAACGGTTAACACGGACCAGTTAAGAAATCTAAGAGATGTTGGCTCTGACTCTG 1901 |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1912 TGCTCAAAACGGTTAACACGGACCAGTTACGAAATCTAAGAGATGTTGGCTCTGAGTCTG 1971 Query 1902 ATGGGTTGGAAGTTTTTGGGTTTGGAGGAAGCAATCCACTAGAGCAGCTGGGGCTCTTTA 1961 ||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 1972 ATGGGTTGGCTGTATTTGGGTTTGGAGGAAGTAATCCTCTAGAGCAGCTGGGGCTATTTA 2031 Query 1962 TGAAACATGATGAGGATGAAGATGAAGCCGACCTGCTTGCGTTTCCAGATCCCGGCAACG 2021 |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| | Sbjct 2032 TGAAACATGAGGAGGATGAAGATGAATCCGACATGCTTGCGTTTCCAGATCCCGGCAATG 2091 Query 2022 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGTGTTGTGTCTTGGGTAATGGCA 2081 ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||| Sbjct 2092 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGT-T-GTGTCTTGGATAACAGCA 2149 Query 2082 GTCGAGTGTACATGAATCAGAGAGCTGTTGTAAAAAATAATAGTTGGATTGATATTTAAC 2141 ||| ||||||||||| | ||||||||||||| |||||| |||||||||||||| Sbjct 2150 GTCAAGTGTACATGAGT--------TGTTGTAAAAAATGATAGTTAGATTGATATTTAAC 2201 Query 2142 CAATGCGATGGCTTTTTATCCGAGTAAACAAACACTAGCACTTTATCTCGTGAGTCTAAA 2201 |||||||||||| |||||||||||||||||| || || |||||| | | |||||| ||| Sbjct 2202 CAATGCGATGGCATTTTATCCGAGTAAACAATCAATAACACTTTGTGTAGTGAGTA-AAA 2260 Query 2202 TTTTGTTTAACTCAATAAACCAATGAC 2228 ||||| |||| |||||||||||||||| Sbjct 2261 TTTTGGTTAATTCAATAAACCAATGAC 2287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110541600090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5