BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477347
Length=2398
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator ... 3757 0.0
> AT3G01680.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator
complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G01670.1);
Has 122 Blast hits to 112 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:251981-255513
FORWARD LENGTH=2542
Length=2542
Score = 3757 bits (2034), Expect = 0.0
Identities = 2197/2277 (96%), Gaps = 6/2277 (0%)
Strand=Plus/Plus
Query 4 TCTCAC-AAAGC-AACCCAACCAAGAATGGAGTCGCTGATCAAGTCCCAGCACGCTCAGC 61
||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TCTAACAAAAGCAAACTGAACCAAGAATGGAGTCGCTGATCAAGTCCCAGCACGCTCAGC 86
Query 62 AACTGGCGGGTCACAAGAATACGACCGGTAAAACTCCGGCTATGGAGATGCTACCGGCGA 121
|||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 87 AACTGGCGGGTCACAAGAATACGACCGGTAAAACTCCGTCCATGGAGATGATACCGGCGA 146
Query 122 CGGGACTGGCCATGTCATCGGACGAAAGCATGATGCTGAAACTGATCCAACAGACTCACT 181
||||||| || ||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 147 CGGGACTTGCGATGTCATCGGACGAAAGCATGATGCTGAAGCTGATTCAACAAACTCACT 206
Query 182 CCCCAGATGCTCGCGAAGTCCAAGTGCGTGGCCTTCTCTCTCTCGTTGAAGATATCCTCG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 207 CCCCAGATGCTCGCGAAGTCCAAGTGCGTGGCCTTCTCTCTCTCGTTGAAGATATTCTCG 266
Query 242 ATCGTGCCACTCTTGACTCTGAAGACACCAACGCCTCCATGCTTCCATTGCCCACCGAGG 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 267 ATCGTGCCACTCTTGACTCTGAAGACACCAACGCCTCCATGCTTCCGTTGCCCACTGAGG 326
Query 302 ATAAACTGATGCAGTCAAGCATGATGAGCGTTCTTGATAGTGTCTCCTATGCTATCGATC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 ATAAACTGATGCAGTCAAGCATGATGAGCGTTCTTGATAGTGTCTCCTATGCTATCGATC 386
Query 362 GCGTCGCCTGTGAGATAGCCTACAAGTCTCTGACGGGATCCGACGCACACGAAATCACAA 421
| || ||||| ||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 387 GTGTTGCCTGCGAGATAGCCTATAAGTCTCTGACGGGATCTGATTCACACGAAATCACAA 446
Query 422 TGTCCGTGTTCGAACACCTCTCCAGCTTCCACTGGGACGGCAAGCTCGTTCTGACTCTAG 481
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 447 TGTCCGTGTTCGAACACCTCTCGAGCTTCCAGTGGGACGGCAAGCTCGTGCTGACTCTAG 506
Query 482 CAGCGTTCGCGTTGAATTATGGAGAGTTTTGGCTTCTGGTCCAATTCTACTCAAAGAACC 541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CAGCGTTCGCGTTGAACTATGGAGAGTTTTGGCTTCTGGTCCAATTCTACTCAAAGAACC 566
Query 542 AACTAGCTAAGTCCCTAGCTCTGCTCAAGCTCGTCCCTGTGCAGAACAGAGTGACCCTAG 601
| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 567 AGCTTGCTAAGTCCCTAGCTATGCTCAAGCTCGTCCCTGTGCAGAACAGAGTGACCCTAG 626
Query 602 AGTCTGTGTCCCAAGGGCTCAACGATCTCATCCGAGAGATGAAGAACGTCACGGCATGTG 661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 627 AGTCTGTGTCCCAAGGGCTCAACGATCTCATCCGAGAGATGAAGAGCGTCACGGCATGTG 686
Query 662 TAGTGGAACTCAGCGAGTTACCTGATCGATACATCACACCAGACGTTCCTCAGCTGTCGA 721
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 687 TAGTGGAACTCAGCGAGTTACCTGATCGGTACATTACACCAGACGTTCCTCAGCTGTCGA 746
Query 722 GAATCCTCTCTACAATCCCAATTGCTGTCTATTGGACAATAAGAAGCGTGGTGGCTTGCA 781
||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct 747 GAATCCTCTCTACAATCCCAATTGCTGTCTATTGGACCATAAGAAGCGTCATCGCTTGCA 806
Query 782 TTTCTCAGATCAACATGATCACTGCCATGGGACACGAGATGATGAACACTCAAATGGATT 841
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 807 TTTCTCAGATCAACATGATCACTGCTATGGGACATGAGATGATGAACACGCAAATGGATT 866
Query 842 CATGGGAAACGTCGATGTTAGCTAACAAGCTGAAGAACATTCATGACCATCTCTCTGAGA 901
||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 867 TATGGGAAACATCGATGTTAGCTAACAAGCTTAAGAACATACATGACCATCTCGCTGAGA 926
Query 902 CCTTGAGGCTTTGTTACCGTCACATAGAGAAGCAGAGGAGCTCAGAGTCCTTAAAGGTGT 961
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 927 CCTTGAGGCTTTGTTACCGGCATATAGAGAAGCAGAGGAGCTCAGAGTCCTTAAAGGTGT 986
Query 962 TGCATTCTCTATTCGACACCACTCACATTGATAACATGAAGATTCTCACGGCCTTGATAC 1021
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 987 TGCATTCTCTATTCGACACCACTCACATTGATAACATGAAGATTCTCACGGCCTTGGTTC 1046
Query 1022 ATCCCAAACCCCACATCACTCCATTGCAAGATGGTTTGACCAAGAGAAAGGTTCACTTGG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ATCCCAAACCCCACATCACTCCATTGCAAGATGGTTTGACCAAGAGAAAGGTTCACTTGG 1106
Query 1082 ATGTGTTGAGGAGGAAGACAGTGTTGCTGCTCATCTCTGATCTCAACATACTACAAGATG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 ATGTGTTGAGGAGGAAGACAGTGTTGCTGCTCATCTCTGATCTCAACATACTACAAGATG 1166
Query 1142 AGCTATCGATTTTCGAGCAAATCTACACAGAGTCAAGGAGGAACTTGGTTGGGGTCGATG 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 AGCTATCGATTTTCGAGCAAATCTACACAGAGTCAAGGAGGAACTTGGTTGGGGTCGATG 1226
Query 1202 GTAAGAGTCATATGCCTTACGAGGTTGTGTGGGTTCCAGTCGTGGATCCTATTGAAGATT 1261
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1227 GTAAGAGTCATATGCCTTACGAGGTTGTGTGGGTTCCAGTAGTGGATCCTATTGAAGATT 1286
Query 1262 TTGAAAGATCTCCGATTTTACAGAAGAAATTTGAGGATCTCCGTGACCCTATGCCATGGT 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TTGAAAGATCTCCGATTTTACAGAAGAAATTTGAGGATCTCCGTGACCCTATGCCATGGT 1346
Query 1322 ACTCAGTGGATAGCCCGAAGCTGATAGAGAGACATGTGGTGGAGTTCATGAGAGGGAGAT 1381
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1347 ATTCAGTGGATAGCCCGAAGCTGATAGAGAGACATGTGGTGGAGTTTATGAGAGGGAGAT 1406
Query 1382 GGCATTTCATGAACAAGCCGATACTTGTGGTGATTGATCCACAAGGCAACGAGGCTAGCC 1441
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GGCATTTTATGAACAAGCCGATACTTGTGGTGATTGATCCACAAGGCAACGAGGCTAGCC 1466
Query 1442 TCAATGCGCTTCACATGATCTGGATTTGGGGCACTGAAGCTTTCCCTTTCACTAGATCTC 1501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 TCAATGCGCTTCATATGATCTGGATTTGGGGCACTGAAGCTTTCCCTTTCACTAGATCTC 1526
Query 1502 GTGAGGAAGAGCTCTGGAGGAGAGAGACCTTTTCGCTTAACCTCATCGTCGACGGCATCG 1561
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1527 GTGAGGAAGAGCTCTGGAGGAGAGAGACCTTTTCCCTTAACCTCATCGTCGACGGCATCG 1586
Query 1562 ACTCTGTCATTTTCAACTGGATAATCCCGGATAATTACATTTTCCTGTACGGAGGAGATG 1621
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1587 ACTCTGTCATTTTCAACTGGATAAAACCGGATAATTACATTTTCCTGTACGGAGGAGATG 1646
Query 1622 ACTTGGACTGGATAAGGAGATTTACAATGGCGGCCAAAGCAACGGCCAAAGATTCCAACG 1681
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1647 ACTTGGACTGGATAAGGAGATTCACAATGGCGGCCAAAGCAACGGCCAAAGATTCCAACG 1706
Query 1682 TGAACCTGGAGATGGCTTACGTCGGAAAACGAAACCATAGCCACAGGGAACAGATCAGGC 1741
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 TGAACCTTGAGATGGCTTACGTCGGAAAACGAAACCATAGCCACAGGGAACAGATCAGGC 1766
Query 1742 GTATCAGTGAAGCAGTCAGGTCTGAAAACCTGAGCCATAGCTGGGCCGAGCCTGCCTTGA 1801
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1767 GTATCAGTGAAGTAATCAGGTCTGAAAACCTGAGCCATAGCTGGGCCGAACCTGCCTTGA 1826
Query 1802 TGTGGTTCTTCTGGACTAGGCTCGAGAGCATGTTGTACTCTAAGATTCAACTCGGTAAAG 1861
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1827 TGTGGTTCTTCTGGACTAGGCTCGAGAGCATGTTGTACTCCAAGATTCAACTCGGTAAAG 1886
Query 1862 CCGATGATCAGGACGATGTGATGCAAGGAATCAAGAAGATACTAAGCTACGACAAGCTTG 1921
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1887 CCGATGATCACGACGATGTGATGCAAGGAATCAAAAAGATACTAAGCTACGACAAGCTTG 1946
Query 1922 GAGGATGGGCACTATTGAGCAAAGGACCAGAGATAGTGATGATCGCTCACGGTGCGGTAG 1981
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1947 GAGGATGGGCACTACTGAGCAAAGGACCTGAGATAGTGATGATCGCTCACGGTGCCATAG 2006
Query 1982 AGAGGACTATGAGTGCTTACGATCGGACCTGGAAAGCCCACGTCCCGACCAAAGGCTATA 2041
||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 2007 AGAGGACTATGAGTGTTTACGACCGGACCTGGAAAACCCACGTCCCGACCAAAGGCTACA 2066
Query 2042 CCAAAGCAATGTACGACCACCACCACGATGAGGTCCTCCGTGAAACCGGAAAACCTTGCG 2101
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 CCAAAGCAATGTCCGACCACCACCACGATGAGGTCCTCCGTGAAACCGGAAAACCTTGCG 2126
Query 2102 GCCACTTTGATTTCCACATCACTGCTCGGAGCGGTCGGATTCCGGAGAAGATGA-TGTGC 2160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2127 GCCACTTTGATTTCCACATCACTGCTCGGAGCGGTCGGATTCCGGAGAAGATGAAT-TGC 2185
Query 2161 TTCGAGTGTCAGCGTCCCATGGAGAAGTACATGAGCTT-TACTTGTTGTCACGATGAAAA 2219
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 2186 TTCGAGTGTCAGCGTCCGATGGAGAAGTACATGAGCTTCT-CTTGTTGTCACGATGAAAA 2244
Query 2220 GCTCCACGAAGACGAGAACTACAACTTCTAAATGATGCAATAAGCACACGTCTCTTC 2276
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2245 GCTCCACGAAGACGAGAACTACAACTTCTAAATGATGCAATAAGCTCACGTCTCTTC 2301
Score = 169 bits (91), Expect = 1e-40
Identities = 115/126 (91%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 2277 AATAATTTCTGAATTTCAATGCCTTTGTAT----GAGAATCGGTCAGTCCATGTGTGTGG 2332
|||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||
Sbjct 2358 AATAATTTCTGAATTTCAATATCTTTGTATGAGAGAGAATTGGTCATTCCATGTGTGTGG 2417
Query 2333 TTTGGCCGTTGTGGGACATGTTCGATTGAAGTATTCCTAATAATTTTCAATAATAAACAA 2392
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2418 TTTGGCCTTTGTGGGACATGTTCGATTGAAGTATTCCTAATAATTTTCAATAATTAACAA 2477
Query 2393 TATCTT 2398
| ||||
Sbjct 2478 TTTCTT 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119075692740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5