BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477371
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724... 2169 0.0
AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase... 821 0.0
> AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724-198019
REVERSE LENGTH=1319
Length=1319
Score = 2169 bits (1174), Expect = 0.0
Identities = 1273/1320 (96%), Gaps = 9/1320 (1%)
Strand=Plus/Plus
Query 1 ATGAGACTCCATTCTTTTAAACTCTCAAATCTTTCAACCAATCCCATAATTCACTTAAGT 60
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGACTCCGTTCTTTTAAACTCCCAAATCTTTCAACCAATCCCATTATTCACTTAAGT 60
Query 61 ATATAGTAGCTTCCACAAGAGATCTTAGTTATAACTATAAATACAC-TGATCTCACTCTC 119
||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||
Sbjct 61 ATATAGTAGCTTCCATAAGAG-TCTTAGTTCTAACTATAAATACACAT-ATCTCACTCTC 118
Query 120 ACTGATCTCCACTTCTCTTCACCAGCAAATGTCGACCGctcctctctccggcttcttcct 179
||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 119 TCTGATCTCCGCTTCTCTTCGCCAACAAATGTCGACCGCTCCTCTCTCCGGCTTCTTTCT 178
Query 180 cacttccctttctccttctcaatcttctctccagaaactctctcttcgtacttcttccAC 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CACTTCACTTTCTCCTTCTCAATCTTCTCTCCAGAAACTCTCTCTTCGTACTTCTTCCAC 238
Query 240 CGTCGCTTGcctccc-ctcctcctcttcttcttcctca---tcctcctcctcgtcttccc 295
||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 239 CGTCGCTTGCCTCCCAC-CCGCCTCTTCTTCTTCCTCATCTTCCTCCTCCTCGTCTTCCC 297
Query 296 gttccgttccAACCCTTATCCGTAACGAGCCCGTTTTTGCCGCTCCTGCTCCTATCATTG 355
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 GTTCCGTTCCAACGCTTATCCGTAACGAGCCAGTTTTTGCCGCTCCTGCTCCTATCATTG 357
Query 356 CCCCTTATTGGAGCGAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCA 415
||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 358 CCCCTTATTGGAGTGAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCA 417
Query 416 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 477
Query 476 TCACGGCGGCGCTTCAGACAGGTACTTCGTCCGACAAGAAAGCTTTCGACCCCGTTGAAA 535
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 478 TCACAGCGGCTCTTCAGACAGGTACTTCATCCGACAAGAAAGCTTTCGACCCCGTCGAAA 537
Query 536 ACATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CCATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 597
Query 596 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCAC 655
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 598 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCAC 657
Query 656 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 717
Query 716 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 777
Query 776 AATACGCGGTCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 835
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATACGCGGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 837
Query 836 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 897
Query 896 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 957
Query 956 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAA 1015
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 958 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAA 1017
Query 1016 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1077
Query 1076 GAGGCTACTATGACTTCATTAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1135
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGGCTACTATGACTTCGTCAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1137
Query 1136 CCGAAACTAGCTCTGTGAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAA-CTC 1194
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 CCGAAACTAGCTCTGTTAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAAACTC 1197
Query 1195 TTTGAAGCCTTACCCGATTTCACATTTTCAATTCAATAACACCAAGTTATTCTTTTCATG 1254
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 1198 TTTGAAGCCTTACCCGATTTCACATTGTCAATTCAATAACACCAAGTTGTTGTTTACATG 1257
Query 1255 TAGATCTTGATGAAAGTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAAAAATT 1314
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 CAGATCTTGATGAAACTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAGAAATT 1317
> AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase
2 | chr5:4757972-4762615 FORWARD LENGTH=1514
Length=1514
Score = 821 bits (444), Expect = 0.0
Identities = 655/756 (87%), Gaps = 17/756 (2%)
Strand=Plus/Plus
Query 370 GAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 429
|||| |||||||| ||| |||| ||||| || || |||||||||||||||||||||||
Sbjct 497 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 555
Query 430 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGGCAAAGGTGGAGCAGATCACGGCGGCGCT 488
|||||||| || || || || || || ||||| |||||| || |||||||||||| |||
Sbjct 556 GAGAAGGATGATCTGAAGGA-TGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGCT 614
Query 489 TCAGACAG-GTACTTCGTCCGACAAG-AAAGCTTTCGACCCCGTTGAA-AACATTAAGCA 545
|||| ||| | | || || ||| || ||| |||| || ||||| ||| | |||||| |
Sbjct 615 TCAGGCAGCCT-CGTCATCGGAC-AGCAAATCTTTTGATCCCGTCGAACGA-ATTAAGGA 671
Query 546 GGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGCT 605
|||||| ||| |||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 672 AGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCT 731
Query 606 CG-CAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCACGTGTGTGTC 664
|| |||| |||||||| || ||||||||||||||||| |||||||||||||| ||||| |
Sbjct 732 CGCCAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCC 790
Query 665 CATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAACA 724
|||||||||| || ||||| || || ||||||||||||||||| ||||| || ||||| |
Sbjct 791 CATCACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATA 850
Query 725 TGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCGG 784
||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| |
Sbjct 851 TGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTG 910
Query 785 TCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATCA 844
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 911 TCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCA 970
Query 845 AAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTGG 903
| ||||||||||| ||||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct 971 AGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGACTTCATAGAGGATTGG 1029
Query 904 GTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCCTT 962
|||||||||||||||||||| |||||||| ||| | ||||| | || | |||||| ||
Sbjct 1030 GTCAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCATT 1088
Query 963 TGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAAACCTATT 1022
|||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 1089 TGAAGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATT 1148
Query 1023 GACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCTA 1082
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1149 GACATATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTA 1208
Query 1083 CTATGACTTCATTAAGGG-TGCTTTTGAGCTTTGGG 1117
||||||||| |||| || | |||| ||||||||||
Sbjct 1209 CTATGACTTTGTTAATGGCTCCTTT-GAGCTTTGGG 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5