BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477375
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01480.1 | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:1... 2305 0.0
> AT3G01480.1 | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188384-190851
FORWARD LENGTH=1676
Length=1676
Score = 2305 bits (1248), Expect = 0.0
Identities = 1448/1542 (94%), Gaps = 23/1542 (1%)
Strand=Plus/Plus
Query 23 TTTCTCATGTTCTTTTCGGACAGAACAAAAACTCCCTAATCC-AATGTCAATTCCTTTGG 81
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 56 TTTCTCATGTTCTTTTCGGACAGAAC-AAAACTCCCTAATCCAAATGTCAATTCCTTTGG 114
Query 82 TCTGTCTCTGAAAAATCATCTCTCTCCAAACCCTTTTTCAATTTTAAC--T--A---TC- 133
||| |||||||| |||||||||||| ||||||| | |||||||||||| | | ||
Sbjct 115 TCTCTCTCTGAATAATCATCTCTCTTCAAACCC-TATTCAATTTTAACTATCGATCTTCG 173
Query 134 G---A-TCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 189
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GCTAAGTCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 233
Query 190 TCCAGATTTCCCAGAAGAAGAATCGATTTTTCTTGCTCCAAAAAACCCCTCCAAGTTCGT 249
||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 234 TCCAGATTTCCCAGAAGAAGAATCGGTTTTTCTTGCTCCAAAAAGCCCCTCGAAGTTCGT 293
Query 250 TCTTGTTCCGGCAACACTCGTGAAAATAAGCAGAGAGGGACATTTGCATCATTGAAAGAA 309
| || ||||||||| |||||| | | ||||||||||||| ||||| ||||| ||||||||
Sbjct 294 TGTTCTTCCGGCAATACTCGTTACACTAAGCAGAGAGGGGCATTTACATCACTGAAAGAA 353
Query 310 TGTGCCATTTCATTAGCTTTATCGGTTGGTTTAATAGCTTCAGTACCTTCGATTGCTTCG 369
||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 354 TGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTG 413
Query 370 CCTCCCAATGCTTACGCAGTGACGAATCCAGCGATTCCAGATGTTTCGGTGTTGATCTCT 429
|||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 414 CCTCCCAATGCTCACGCAGTGGCGAATCCAGTGATTCCAGATGTTTCAGTGTTGATCTCC 473
Query 430 GGTCCTCCGATTAAAGATCCAGAAGCTTTACTAAGATATGCATTGCCTATTGACAATAAA 489
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GGTCCTCCGATTAAAGATCCGGAAGCTTTACTAAGATATGCATTGCCTATTGACAACAAA 533
Query 490 GCCATCAGAGAAGTACAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 549
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 593
Query 550 GTTAAGGCTCTCGATTCTGTTGAACGGAATGTGAGGCAGGCAAATAGATCATTGCAGCAA 609
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 594 GTTAAGGCTCTAGATTCTGTTGAACGGAATGTGAGGCAGGCAAGTAGAACATTGCAGCAA 653
Query 610 GGGAAAACTATGATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 669
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 713
Query 670 ATCGAAAAGTTGGAAGCTGGTATGCAAGATATGCTAAAGATTGTGGAAGATCGTAAAAGA 729
|| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 714 ATTGAAAAGTTGGAAGCTGGGATGCAAGATATGCTTAAGATAGTGGAAGATCGAAAAAGA 773
Query 730 GATGCGGTTGCTTCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 789
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GACGCAGTTGCTCCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 833
Query 790 ATGGTTGATGGCTTCCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTTCTCAAA 849
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 834 ATGGTTGATGGCTTTCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTCCTCAAG 893
Query 850 GGAAGAGCCAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 909
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGAAGAGCTAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 953
Query 910 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACTGCGGGGAATTTTGTGGAC 969
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 954 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACCGCCGGAAACTTTGTGGAC 1013
Query 970 TTGGTAGAGCGGCATTTCTATGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1029
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGGTAGAGAGGCATTTCTACGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1073
Query 1030 CAAACAGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1089
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CAAACGGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1133
Query 1090 CGGACGGTTCCTCTAGAGATTATGGTGACTGGAAAGAAAACGCCTTTTTACGGCTCAACT 1149
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1134 AGGACGGTTCCTCTAGAGATTATGGTGACTGGAGAGAAAACGCCTTTTTACGGCTCAACT 1193
Query 1150 CTTGAAGAACTGGGTCTTTACAAGGCTCAGGTTGTGCTTCCTTTCAACGCATTTGGGACA 1209
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1194 CTTGAAGAACTTGGTCTTTACAAGGCTCAGGTTGTGATTCCTTTCAACGCTTTTGGGACA 1253
Query 1210 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1313
Query 1270 CTAAAAGAGAGCGAGCTGACTCCAAGCAATTCCAACATCTTGGACGGTCGTTACGCTGTC 1329
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1314 CTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTGTC 1373
Query 1330 TTTGGTTACGTTACTGACAACGAAGATTTTCTTGCTGATCTTAAAGTTGGTGATGTTATT 1389
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1374 TTTGGTTACGTTACTGATAACGAAGATTTTCTAGCTGATCTTAAAGTTGGTGATGTTATC 1433
Query 1390 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1493
Query 1450 GGTTAACTTCGCTTATATTTC-CCTTTTCTTGGTTCATAGTAAGTAATACTCTGTTTATT 1508
|||||||| | ||||| ||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1494 GGTTAACTCCTCTTATCTTTTTCCTTTTCTTGGTTC---GTAATTAATACTCTGTTTATT 1550
Query 1509 TTTAATTTTGTGAGAGTA-ATTTAAAAGGTGCATCACTTTTT 1549
|| ||||||||||||||| ||| ||| ||||||| ||||||
Sbjct 1551 TT-AATTTTGTGAGAGTATATT-AAA-GGTGCATGTCTTTTT 1589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5