BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477399
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01290.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1585 0.0
> AT3G01290.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr3:88054-89422 REVERSE
LENGTH=1122
Length=1122
Score = 1585 bits (858), Expect = 0.0
Identities = 1015/1085 (94%), Gaps = 34/1085 (3%)
Strand=Plus/Plus
Query 1 AAACTTACACAGAGACAAATA--T-TCATAA-TC-TTC-T--TGCTTCTTG-TTCTTAGT 51
||||||||| ||||||||||| | | |||| | ||| | | ||||||| ||||| ||
Sbjct 1 AAACTTACAGAGAGACAAATACCTATAATAAGCCATTCATAAT-CTTCTTGCTTCTT-GT 58
Query 52 TCTGAAGAATTAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 111
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TC---AGAA-TAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 114
Query 112 GTCAAGGAGAGATTTGGCAAATTCCAAAAAATACTTAATCCAGGTCTCCAGTTTGTTCCC 171
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 115 GTCAAGGAGAGATTTGGCAAATTCCAAAAAGTACTTAATCCAGGTCTCCAATTTGTTCCA 174
Query 172 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTCCGTCTTCAGCAACTCGATGTT 231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 175 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTTCGTCTTCAGCAACTCGATGTT 234
Query 232 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 294
Query 292 AGAGTCTTGGTTGACAAGGCAAGTGATGCTTTTTACCGACTCAGCAATCCAACCACCCAA 351
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 AGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAA 354
Query 352 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 414
Query 412 GTGTTCGAGCAGAAGAATGAAATCGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 471
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 415 GTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 474
Query 472 ACTGCTTATGGTTACGAGATCCTTCAAACCCTAATCATCGACATCGAGCCTGATCAACAG 531
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 475 ACTGCTTATGGTTACGAAATCCTTCAAACCCTAATTATCGACATTGAGCCTGATCAACAG 534
Query 532 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCCGCGAACGAA 591
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 535 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCAGCGAGCGAA 594
Query 592 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 654
Query 652 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 714
Query 712 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCCAAGGATGTGTTGGACATG 771
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCGAAGGATGTGTTGGACATG 774
Query 772 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAAGCCTCG 831
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAATCCTCT 834
Query 832 GCCGTGTTTATCCCTCACGGTCCCGGCGCCGTCTCTGACGTGGCAACGCAGATTCGAAAT 891
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 835 GCGGTGTTTATCCCTCACGGTCCAGGCGCCGTCTCTGACGTGGCAGCGCAGATTCGAAAT 894
Query 892 GGATTATTACAGGCCAACAATGCCTCCTCCTCCTAATCACTCAAGTCAAATTGTTTTGGT 951
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 895 GGATTATTACAGGCCAACAATGCCTCCT------AATCACTCAAGTCAAATTGTCTTGGT 948
Query 952 CGTCTCTTT-TAATACTTTTGTATCTTTTTTATTaaaaaaaGGTAAATAT-A-TAATGGT 1008
||||||||| || || ||||||||||| || |||||||| ||||||| | | | | |
Sbjct 949 CGTCTCTTTATA-TATTTTTGTATCTTCTT-ATTAAAAA--GGTAAATTTGACTTTTAAT 1004
Query 1009 GTACTGAT-TG-TGATTTGTCATTATGT-ATTTATGTTTGTACCTATCTCTTCTGTGAGT 1065
|| || | || | ||| || ||| ||| ||| ||||||||||||||||||| |||||||
Sbjct 1005 ATAATGGTGTGCTTATT-GTGATT-TGTCATT-ATGTTTGTACCTATCTCTTTTGTGAGT 1061
Query 1066 TGTGT 1070
|||||
Sbjct 1062 TGTGT 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5