BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477443
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding pro... 889 0.0
> AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding protein
2) family protein | chr3:385317-386538 REVERSE LENGTH=1222
Length=1222
Score = 889 bits (481), Expect = 0.0
Identities = 667/751 (89%), Gaps = 36/751 (5%)
Strand=Plus/Plus
Query 416 CCGATGGAGGCTCAGACATGTTCCAGCTGGATCGTACGCGTTCTCTGCCTGTCGTAACGG 475
||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 458 CCG-TGGAGGCTCAGACATGTTTCAGCTGGATCGGACGCGTTCTCTGCCGGTCGTAACGG 516
Query 476 AGTTCGAGATAGACAAGGAGACGGAGAGGAAAAGGAAACGACCGGAGAAGACGAGGGCAT 535
|| | || ||||| || ||| |||| ||| | | | ||||||||||||||||
Sbjct 517 AGATGGATATAGAGAAAGAG-CGGA-AGG----TG--TC-A---GAGAAGACGAGGGCAT 564
Query 536 TTATGGAATTTCCGGTTACAAACAGAGGAACATATCTCACAGAAGATAAAAACAGAGGCC 595
||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 565 TTATGGAATCTCCGGTTACAAACAGAGGAGCATATCTAACAAAAGATAAAAACAGAGGCC 624
Query 596 AAGTCGCCGAAACAGAGAAGGCGAGGGCATTTCTGGAATTTAAGATTCCACCGGGCAAGG 655
||| || ||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 625 AAGCCGTCGAAACAGAGAAGCCGAGGGCATTTCTGGAATTTAAGATTCCTCCGACCAAGG 684
Query 656 AGGGAAAGGAAGATAAAGATCGTTTTGTTGTCACTAGTCCGGTCAA-GGGAAATGGTAAA 714
|||||||| |||| |||||||| || ||||||||| |||||||||| ||| || ||||||
Sbjct 685 AGGGAAAGAAAGAAAAAGATCGGTTGGTTGTCACTGGTCCGGTCAACGGG-AAGGGTAAA 743
Query 715 AATGGAAATACGGCGAAG-A--AGAAGAAGAATGTGGAAGTTTCAGGAATGGAGAAGGCG 771
|||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||
Sbjct 744 AATGGAAATACGGCGAAGAAGCAGAAGAATAATGTGGAAAATTCAGGAATGGAGAAGGCG 803
Query 772 AGGAACATTCTAGAAGACATGCCGTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 831
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 804 AGGAACATTCTTGAAGACATGCCTTGTGTGTCGACGAGAGATGTCGGAGCCGACGGGAAA 863
Query 832 CGAGTGGAAGGGTTTCTTTATTGGTACGGAGGGAAAAAGGAGGAGGTCAGGATAGTCTGT 891
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||
Sbjct 864 CGAGTGGAAGGGTTTCTTTACTGGTACGGAGGGAACAAGGAGGAGGTCAAGATAGTTTGT 923
Query 892 GTTTGCCATGGTAGTTTTCTTTCTCCGGCGGAGTTTGTTAGGCACGGCGGAGGTACCGTC 951
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 924 GTTTGCCACGGCAGTTTTCTTTCTCCGGCGGAATTTGTTAGGCACGGCGGAGGTACCGTC 983
Query 952 AGCGACGACGGTGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1011
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AGCGATGATGATGGTGGTGATGTTATGATTAACCCTCTTAGACATATTGTTGTTAAACTT 1043
Query 1012 CCTTCTTCTTCCTTGTAGTCGATCTAGGGATTATTTATTTATCCCCAACTATATATTATT 1071
||||||||||| | | || | |||||||||| |||||||||||||||| |||||
Sbjct 1044 CCTTCTTCTTC-T---A-TC--T--AGGGATTATT-ATTTATCCCCAACTAT-TATTA-- 1090
Query 1072 AGAGGTCTCAtttttttttttCTC-AATTTTCAAAGTGTAACGATGTCAAAATAATTTGA 1130
||| ||||||||||| ||||| | || ||||||| ||||||||||||||| ||||||||
Sbjct 1091 -GAGCTCTCATTTTTTGTTTTCCCTAACTTTCAAAATGTAACGATGTCAAACTAATTTGA 1149
Query 1131 CCGACGA--CTAAGCTGAAGCATGTACATTT 1159
||||| | ||| ||||||||||||||||||
Sbjct 1150 CCGACTAAACTA-GCTGAAGCATGTACATTT 1179
Score = 652 bits (353), Expect = 0.0
Identities = 396/417 (95%), Gaps = 2/417 (0%)
Strand=Plus/Plus
Query 2 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTCAGCCTAAAACGTTTCTCCC 61
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 6 AAAATTGTTTCGTCTCTCTCAAGATTGAAAATAGAAAGTTAAGCCAAAAACGTTTCTCCC 65
Query 62 TTCTCTTTCGAATTTCTCTGACTTCGATATTTTTGGTTATGGAGATGATAAGAGGCAGGG 121
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 66 TTCTCTTTCGAATTTCTCTGACTTTGATA--TTTGGTTATGGAGATGATAAGAGGCAGGG 123
Query 122 GAATCCCAAACGGCGTCGTTCAAGTGCCGAATCTTTCTGCTAATAATCTCTTGCAGAAGT 181
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 124 GAATCCCAAACGGCGTCGTTCAAGTACCCAATCTTTCTGCTAATAATCTCTTGCAGAAGT 183
Query 182 TTTTCATCGCAAGCAACCATTTTTGTCAGCTAGACTCTGAGCCTGGTGAGAGTCGagaag 241
|||||||||||||||||||||||||||||| ||||||||||| |||||||| || | |||
Sbjct 184 TTTTCATCGCAAGCAACCATTTTTGTCAGCGAGACTCTGAGCATGGTGAGAATCAACAAG 243
Query 242 aagcaaagaagaaagaagatgaagcagaagaggatgagaaagaCGTGGAGCTAACGTTAG 301
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AAGCGAAGAAGAGAGAAGATGAAGCAGAAGAGGATGAGAAAGACGTGGAGCTAACGTTAG 303
Query 302 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGGAAAAGGAAGAACTTTG 361
||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 304 GTCTTTCGCTTAATGGACAGTTTGGTACGGATCCGAGATCGAGAAAAAGGAGGCACTTTG 363
Query 362 ATCTCGGTCGATCTTCTTCGATACCGGAAGGTTTTTTCTTCGATGAACAAAGATCCG 418
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 364 AACTGGGTCGATCTTCTTCGATACCGGAAGGTTTCGTCTTCGATGAACAAAGATCCG 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5