BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477472 Length=1174 Score E Sequences producing significant alignments: (Bits) Value AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:48... 1829 0.0 AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:51... 285 7e-76 > AT3G02380.1 | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487236-488693 REVERSE LENGTH=1315 Length=1315 Score = 1829 bits (990), Expect = 0.0 Identities = 1074/1116 (96%), Gaps = 0/1116 (0%) Strand=Plus/Plus Query 52 ATGTTGAAAGAAGAGAGTAACGAGAGTGGTTCTTGGGCACGAGCATGTGACACTTGTCGT 111 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 70 ATGTTGAAAGAAGAGAGTAATGAGAGTGGTACTTGGGCACGAGCATGTGACACTTGTCGT 129 Query 112 TCAGCCGCCTGCACTGTCTACTGTGAAGCTGACTCTGCCTACTTGTGCACCACCTGTGAT 171 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 130 TCAGCCGCCTGCACTGTCTACTGTGAAGCCGACTCTGCCTACTTGTGCACCACCTGTGAT 189 Query 172 GCTCGAGTTCACGCAGCCAATCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 231 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 190 GCTCGAGTTCACGCAGCCAACCGTGTTGCTTCTCGCCATGAACGTGTTCGTGTCTGTCAG 249 Query 232 TCATGTGAATCTGCCCCGGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGCACA 291 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 250 TCATGTGAGTCTGCCCCAGCTGCGTTTTTGTGTAAAGCAGACGCTGCGTCTCTTTGTACA 309 Query 292 GCTTGTGATGCTGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAACGAGTTCCG 351 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 310 GCTTGTGATGCAGAGATTCATTCCGCAAACCCACTAGCTAGACGTCATCAGCGAGTTCCG 369 Query 352 ATTCTGCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCAGAT 411 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 370 ATTCTTCCATTATCTGCAAACTCTTGCAGCTCCATGGCCCCAAGTGAGACTGATGCTGAT 429 Query 412 AACGATGAGGATGATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGC 471 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 430 AACGATGAGGATGATCGAGAGGTTGCTTCGTGGTTACTCCCTAATCCAGGGAAAAACATC 489 Query 472 GGTAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTCGTGGATTACAGC 531 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 490 GGTAATCAGAATAATGGGTTCTTGTTTGGTGTTGAGTACCTTGATCTTGTGGATTACAGC 549 Query 532 TCCAGCATGGACAACCAATTCGAAGATCATCAGTACAGTCACTACCAAAGGAGCTTTGGA 591 ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| Sbjct 550 TCCAGCATGGACAACCAATTCGAAGATAATCAGTACACTCACTACCAGAGGAGCTTTGGA 609 Query 592 GGAGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAGTCACCTTCAACAAAGCCAA 651 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 610 GGAGATGGAGTTGTGCCGCTTCAAGTTGAAGAATCAACAAGTCACCTGCAACAAAGCCAA 669 Query 652 CACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCAGGACCTCACTACAACAACAAC 711 || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 670 CAAAACTTTCAGTTGGGTATCAACTATGGATTCTCCTCAGGAGCTCACTACAACAACAAC 729 Query 712 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730 TCCTTAAAGGACCTAAACCATAGCGCATCCGTTTCATCAATGGACATCAGTGTTGTGCCA 789 Query 772 GAGTCAACAGCAAGTGACATAACAGTCCAACACCCAAGAACAACTAAAGAGACGACAGAC 831 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 790 GAGTCAACTGCAAGTGACATAACAGTCCAACACCCAAGAACTACTAAAGAGACGATAGAC 849 Query 832 CAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGCAGCTTACTCCAATGGAGAGGGAGGCT 891 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 850 CAACTATCTGGTCCTCCTACTCAGGTGGTGCAACAGCTTACTCCAATGGAGAGGGAGGCT 909 Query 892 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACGAGGAAATTTGACAAGACAATAAGGTAT 951 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 910 AGGGTCCTGAGATACAGAGAGAAGAAGAAGACAAGGAAATTTGACAAGACAATAAGATAT 969 Query 952 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCCGATTCGCAAAGAGG 1011 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 970 GCTTCAAGAAAGGCATATGCAGAGATAAGACCACGGATCAAGGGCAGATTCGCAAAGAGG 1029 Query 1012 ATAGAAATTGAAGCTGAGGCTGAAGAAATTTTCTCAACATCGCTAATGTCTGAGACCGGA 1071 ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1030 ATAGAAACTGAAGCTGAGGCTGAAGAAATCTTCTCAACATCGCTAATGTCTGAGACTGGA 1089 Query 1072 TATGGAATTGTTCCTTCCTTCTGAACTCGTGTGGCGAAGATGGACTAGATTGCATGCTGT 1131 ||||||||||| |||||||||| ||||| | |||||||||| |||||||||||||||||| Sbjct 1090 TATGGAATTGTCCCTTCCTTCTAAACTCCTATGGCGAAGATAGACTAGATTGCATGCTGT 1149 Query 1132 AAATTACTTCTAGTTTGTATTTCTACAAGTTTTTAC 1167 ||||||||||||||||| ||||||||||||| |||| Sbjct 1150 AAATTACTTCTAGTTTGGATTTCTACAAGTTATTAC 1185 > AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176091-5177897 REVERSE LENGTH=1698 Length=1698 Score = 285 bits (154), Expect = 7e-76 Identities = 597/797 (75%), Gaps = 85/797 (11%) Strand=Plus/Plus Query 415 GATGAGGATG-ATCGAGAGGTGGCTTCGTGGTTACTGCCTAATCCAGGGAAAAACAGCGG 473 ||||| |||| | | ||||| |||||| ||||| |||||||| ||||||||||||| || Sbjct 821 GATGAAGATGAAGC-AGAGGCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGTGG 879 Query 474 TAATCAGAACAATGGGTTCTTGTTTGGTGTTGAGTACCTTG-ATCTCGTGGATTACAGCT 532 ||| | |||||||| |||| | |||| | ||||| | || | || || ||||| || | Sbjct 880 TAA-C--AACAATGGCTTCTCGATTGGGGATGAGTTTC-TGAACCTTGTTGATTATAGTT 935 Query 533 CCAGCATGGACAACCAATT--C-GA--AGAT-C-ATCAG--T--AC-AG--T-C-AC-TA 575 | || | || || ||||| | || | || | ||||| | || || | | || || Sbjct 936 CGAG--T-GATAAGCAATTCACAGATCA-ATCCAATCAGTATCAACTAGACTGCAACGTA 991 Query 576 -C-CAAAGGAGCTTTGGAGG-AGATGGAGTTGTGCCACTTCAAGTTGAAGAATCAACAAG 632 | || ||||||| ||| || |||||||||||| ||||||||| |||||| ||||| | | Sbjct 992 CCTCAGAGGAGCTATGG-GGAAGATGGAGTTGTTCCACTTCAAATTGAAGTATCAA-AGG 1049 Query 633 TCACCT-TCAACAA-AGCCAACACAACTTTCAGTTGGGTATCAACTATGGCTTCTCCTCA 690 || | | | ||| || ||||| ||||||||| || ||||||||| ||| ||||| Sbjct 1050 GCA--TGT-ACCAAGAG-CAACAGAACTTTCAGCTGAGTATCAACTGTGG---CTCCTGG 1102 Query 691 GGACCTCACTACAACAACAACTCCTTAAAGG--ACCTAAACCATA--GCGCATCCGTTTC 746 ||| || || | | | |||| || || ||| | |||| | | || ||||| Sbjct 1103 GGAGCT--CT---TCGA-AGCTCC--AATGGTTCCCTCAGTCATATGGTGAAT--GTTTC 1152 Query 747 ATCAATGGACATCAGTGTTGTGCCAGAGTCAACAGCAAGTGACATAACAGT-CCAACACC 805 ||| |||||| | | |||||||| ||||||||| | |||||| |||||| ||| ||| Sbjct 1153 ATCTATGGACCTGGGAGTTGTGCCGGAGTCAACAACGAGTGACGCAACAGTATCAA-ACC 1211 Query 806 CAAGAACAACTAAAGAGACGACAGACCAACTAGCTGGTCCTCCTACTCAGGTGGTGCAGC 865 ||||| | | |||| | |||||||||| | || | | ||| | || | | ||| Sbjct 1212 CAAGATCGCCCAAAGCGGTAACAGACCAACCACCT--TAC-CCT-C-CA---GCT-CAG- 1261 Query 866 A-GCTTACTCCAATGGAGAGGGAGGCTAGGGTCCTGAGATACAGAGAGAAGAAGAAGACG 924 | ||| | ||||| ||| || || ||||| |||||||||||||||||||||||||||| | Sbjct 1262 ATGCTCAGTCCAAGGGACAGAGAAGCTAGAGTCCTGAGATACAGAGAGAAGAAGAAGATG 1321 Query 925 AGGAAATTTGACAAGACAATAAGGTATGCTTCAAG-AAAGGCATATGCAGAGATAAGACC 983 ||||||||||| ||||| ||||| ||||||||||| |||| | |||||||||| |||||| Sbjct 1322 AGGAAATTTGAGAAGACGATAAGATATGCTTCAAGGAAAG-CGTATGCAGAGAAAAGACC 1380 Query 984 ACGGATCAAGGGCCGATTCGCAAAGAGGATAGAAATTGAAGCTGAGGCTGAAGAAAT-TT 1042 ||||||||||||||| || ||||||| || ||| | || | ||||| || || || Sbjct 1381 ACGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCA-AACCAAGCTT 1439 Query 1043 TCTCAACA-TCGCTAATGTCTGAGACCGGATATGGAATTGTTCCTTCCTTCTGAA-CT-C 1099 |||| ||| | | ||| | ||| |||||||||||||||||||| || |||||| || | Sbjct 1440 TCTCCACAAT-GATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGC 1498 Query 1100 GTGTGGCGAAGATGGACTAGATTGCATGCT-GTAAATTACTTCTAGTTTGTATTTC-TAC 1157 | |||| || | |||||| |||||||| ||||||||||||| ||||| | ||| | | Sbjct 1499 -TATGGC-AA-A---ACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGC 1552 Query 1158 AAGTTTTTACCACAGTT 1174 ||||| ||||||| ||| Sbjct 1553 AAGTTATTACCACGGTT 1569 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57630225660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5