BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477473 Length=1681 Score E Sequences producing significant alignments: (Bits) Value AT3G02400.1 | Symbols: | SMAD/FHA domain-containing protein |... 1548 0.0 > AT3G02400.1 | Symbols: | SMAD/FHA domain-containing protein | chr3:489830-491587 FORWARD LENGTH=1758 Length=1758 Score = 1548 bits (838), Expect = 0.0 Identities = 1027/1118 (92%), Gaps = 14/1118 (1%) Strand=Plus/Plus Query 568 AGGGTTGGGAGGCCTCGGAAGAACGCAGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTG 627 |||||||||||||| |||||||||||| | |||||| ||||| ||||||||||||||||| Sbjct 646 AGGGTTGGGAGGCCCCGGAAGAACGCAAGTAGTGCAATTACGGAGGAAGAAGAAGTTGTG 705 Query 628 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACACTGAGAGTGTGCAGAAA 687 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 706 GAGGAGAAAAAAGGCAACTCTAGGGCTCGGAGAGGTAAGAACAGTGAGATTGTCCAGAAA 765 Query 688 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTCAAAAGC 747 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 766 TCAATCAAATTGGAAGTTGAGGATACTCCCAAGGCAGTGGAAATCTCAGAGGTGAAAAGC 825 Query 748 AGGAAGAGAGTGGCAAGGAGCAAGCAGATTGAAAATGCCTGTTTGGGAATGGAGGTTAAA 807 |||||||||||| |||||||||||||||| ||||||| ||||| ||| ||||||||||| Sbjct 826 AGGAAGAGAGTGACAAGGAGCAAGCAGATAGAAAATGAATGTTTTGGATTGGAGGTTAAA 885 Query 808 AATGAGATGAGAACTACTAGGTCTACCAGAAGCAAGAAGACTGAACTTGGTGGAGATTCT 867 |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| ||| Sbjct 886 GATGAGAAGAGAACTACAAGGTCTACCAGAAGCAAGACGACTGAAATTGGTGGAGAGTCT 945 Query 868 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 TTTCTGGAGTTGGAGATGGTCCTGAACCAAGCCCGGAAAAGCCGTGCAAAGAGGAAGAAA 1005 Query 928 GTGGATCAGGAGCCGTCCAAGGAAACTATAAATGATGATGCCGGAGAAGAGGTTTTGGAG 987 ||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||| || Sbjct 1006 ATGGATGAGGAGCCATCCAAGGAGACTAGAAATGATGATGCCGGAGAAGAGGTTTTGAAG 1065 Query 988 AACTGTCATGTTGAAGAAGATACTGAAAATGAAACTCAGGAAGGTTGCAGTGAAAGAAGT 1047 |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| Sbjct 1066 AACTGTCATGTTGAAGAAGATAAGGAAAATGAAGCTCAGGAAGGTTGCAGTGGAAGAAGT 1125 Query 1048 GATGACAAATGTGATAAAGAAGATGAGAGGGAAGGTGATGGATCTAAGAGGGTCGAGCAG 1107 ||||||| ||||||| |||||||||||| |||| | ||||||||||||||||| |||||| Sbjct 1126 GATGACATATGTGATCAAGAAGATGAGAAGGAATGCGATGGATCTAAGAGGGTAGAGCAG 1185 Query 1108 GTGGAAATTGAGTTAAGGAAGAAGAGCACATTAGTAGAAGATGGCCTGAACTGTACTGCT 1167 ||||| ||||||||||||||||| ||||| ||||| | | |||||||| || |||| | Sbjct 1186 GTGGAGATTGAGTTAAGGAAGAAAAGCAC---AGTAG-A-A-GGCCTGAAATGCACTGAT 1239 Query 1168 AGAGAGGATGGAGAGACAGAGAACTTACAAGATATTG-AAGAAGAAA-ATGATAATGAAA 1225 | ||| |||||||| |||||||||| ||||||||||| ||| ||||| | || ||||||| Sbjct 1240 AAAGAAGATGGAGAAACAGAGAACTCACAAGATATTGAAAG-AGAAAGA-GAAAATGAAA 1297 Query 1226 AAGAAAATGGA-CACGAAGAAGGTTGCAGTGAAA-AATGTGATAAAGAAGATGAGAGAGT 1283 | ||||| | | | | |||||||||||||||||| || ||||||||||| ||||||| || Sbjct 1298 ATGAAAAAGAAGCTC-AAGAAGGTTGCAGTGAAAGAA-GTGATAAAGAATATGAGAGGGT 1355 Query 1284 TGGTGATGGGTCTAAGAGGGTAGAGCAGGTGGAGATCGAGTTGAGGAAGAAGAGCACCTT 1343 ||||| |||| ||||||||||||||||||||||||| ||||| |||||||| |||||| | Sbjct 1356 TGGTGGTGGGGCTAAGAGGGTAGAGCAGGTGGAGATTGAGTTAAGGAAGAAAAGCACCGT 1415 Query 1344 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGACAACTTACAAGA 1403 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1416 AGGAGAAGATGACCTGAACTGTACTGTTAGAGAAGATGGAGAGACAGAAAACTTACAAGA 1475 Query 1404 AATTGAAGAAGAATGTCATGAAAAGGAAAGTGAGTGCAAGGTCGAGGAGGCTGGAATTGC 1463 |||||||||||| ||||| || |||||||||| ||||||||||||||||||||| |||| Sbjct 1476 AATTGAAGAAGAGTGTCACGACGAGGAAAGTGACTGCAAGGTCGAGGAGGCTGGATTTGC 1535 Query 1464 GACATTAGATGAGGAAAAGGTTGAGCAGGGCTGGAGCAATAAGAATGTAGAGAGGGTAGA 1523 ||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||| Sbjct 1536 GACATTAGATGAGGAAAAGGTTGGGCAGGGATGGAACAATAAGAAAGTAGAGAGGGTAGA 1595 Query 1524 AGTAGATTTAGGAAAAATGAAACTAAGAGATTGGTTTGAGGCCATAGAGGTTCAACTGCC 1583 |||| |||||| |||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1596 AGTATATTTAGAAAAAATGAAACTAAGAGAATGGTTTGATGCCATAGAGGTTCAACTGCC 1655 Query 1584 AAAACAGATAATTGAAGAGACAGAGAAGATGATAGAGCCCATGAGAAGTAAGAGTATGAG 1643 |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1656 AAAACAGACAATTGAAGAAACAGAGAAGATGATTGAGCCCATGAGAAGTAAGAGTATGAG 1715 Query 1644 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1681 |||||||||||||||||||||||||||||||||||||| Sbjct 1716 AGTTCACAAGCATATTGCAGAGCAAAAGGAAAAGGGCG 1753 Score = 992 bits (537), Expect = 0.0 Identities = 611/646 (95%), Gaps = 8/646 (1%) Strand=Plus/Plus Query 1 ATGGTTCCGCCATTGCTGAAGCTTGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTCCGCCATTGCTGAAGCTCGACTTCACCCAGGGTCCAAGAGCTGGCGATTCTCTA 60 Query 61 GGGTTTAAACCCGGATCCACTATCCGGATCGGTCGATTCGTCCGTGGTAATGAAATCGCC 120 |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| Sbjct 61 GGGTTTAAACCCGGATCCACTATCCGAATTGGTCGAATCGTCCGTGGTAATGAAATCGCC 120 Query 121 ATAAAAGACGCTGGAATCTCTACCAAGCACCTCCGGATCGTCTCCGATTCTGAGAACTGG 180 || |||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 121 ATCAAAGACGCCGGAATCTCCACCAAGCACCTCCGGATCGTTTCCGATTCCGAGAACTGG 180 Query 181 ATAATCCACGATCTTGGGTCTTCCAACGGCACCATATTGAACTCGGAGACTATTGACCCA 240 ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||| || Sbjct 181 ATAATCCACGATCTTGGTTCTTCCAACGGCACCATATTGAACTCTGACACTATCGACTCA 240 Query 241 GATACGCCCATCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTATACTTCCATT 300 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GATACGCCCGTCAATCTTAGCCATGGAGACGAAATTAAGCTTGGTGAGTACACTTCCATT 300 Query 301 TTGGTGAACTTTGTGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTGGTGAACTTTGGGAGTGATGTTGTTCAGGCGCCGCAGGAGCATAAGCTTCCGCCCAGG 360 Query 361 CCAAGGAGGAACAACAAGCGTCTTGCTG-TT----T-CGGATCCGGATCCTATTGAGTCG 414 |||||||||||||||||||| ||||||| || | ||||||||||||||||||||||| Sbjct 361 CCAAGGAGGAACAACAAGCGGCTTGCTGCTTCGGATCCGGATCCGGATCCTATTGAGTCG 420 Query 415 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTCAGGAGAAACCAAAGCGCACGCGTGGATCGTCGAAGCAAGAGGAAAATGAACTGCCC 480 Query 475 AAGA-TAACTAGGGCTTCGAGGAAGAAGACTCTGGACGATATCGCCGATAAAGAAGAGGA 533 |||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 481 AAGAGTA-CTAGGGCTTCGAGGAAAAAGAATCTGGACGATATCGCCGATAAAGAAGAGGA 539 Query 534 ATTGGAGGTGGAAATTGAGAAGAAAGTCAAATCTAGGGTTGGGAGGCCTCGGAAGAACGC 593 |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 540 ATTGGATGTGGAAATTGAGAAGGTGGTCAAAGCTAGGGTTGGGAGGCCTCGGAAGAACGC 599 Query 594 AGGCAGTGCAGTTACGAAGGAAGAAGAAGTTGTGGAGGAGAAAAAA 639 |||||||||| || |||||||||||||||||||||||||||||||| Sbjct 600 AGGCAGTGCAATTGCGAAGGAAGAAGAAGTTGTGGAGGAGAAAAAA 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83081901975 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5