BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477486
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory facto... 1773 0.0
AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 586 2e-166
> AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory factor
7 | chr3:526437-528313 REVERSE LENGTH=1245
Length=1245
Score = 1773 bits (960), Expect = 0.0
Identities = 1091/1152 (95%), Gaps = 18/1152 (2%)
Strand=Plus/Plus
Query 1 TTTCGCGTCTCGAGCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGG-TTTGA 59
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 4 TTTCGCGTCTCGACCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGGATCT-A 62
Query 60 AATGtttttttGATAACAGAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 119
|| | | | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AAAGAGTGTGTGATAACATAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 122
Query 120 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAATTCATGGAGAAAGTTGCGAA 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 123 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAGTTCATGGAGAAAGTTGCAAA 182
Query 180 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGCGAAACCTCTTGTCTGTTGCGTACAA 239
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 183 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGAGAAACCTCTTGTCTGTTGCTTACAA 242
Query 240 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 302
Query 300 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGGAAGATCGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 303 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGAAAGATCGA 362
Query 360 AACCGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AACTGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 422
Query 420 CACTGCATCTTTGGCTGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CACTGCATCTTTGGCCGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 482
Query 480 GTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGGAAGGAATCTGCAGAGAGCACTCTGGT 539
|||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 483 GTACCTTGCTGAGTTTAAGACTGGAGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTGGT 542
Query 540 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCACCCGATTAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 543 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCATCCGATTAG 602
Query 600 ATTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 662
Query 660 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCTATTTCTGAGCTCGACACATTAGG 719
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 663 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCCATTTCTGAGCTGGATACATTAGG 722
Query 720 AGAAGAATCATACAAAGACAGTACACTGATAATGCAACTTCTCCGTGACAATCTGACCCT 779
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 AGAAGAATCATACAAAGACAGTACGTTGATAATGCAACTTCTCCGTGACAATCTGACCCT 782
Query 780 ATGGAATTCTGACATCAATGATGAGGCGGGTGGTGATGAGATCAAGGAGGCGTCAAAACA 839
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 783 TTGGAACTCTGACATCAATGATGAGGCGGGCGGTGATGAGATCAAGGAGGCGTCAAAACA 842
Query 840 TGAGCCGGAAGAAGGGAAACCAGCAGAGACAGGGCAGTGACCagagagagagggagagaC 899
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 843 TGAGCCGGAAGAGGGGAAACCAGCTGAGACAGGGCAGTGACCAGAGAGAGAGGGAGAGAC 902
Query 900 ATTTCTGAGTATGTATGGTACGGATTTTCCAAAAAACATATGAT--GATTATGGTATTTG 957
|||||| ||||||||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 903 ATTTCTAAGTATGTATGGTATGGATTTTCCAAAAA-CATATGATATGATTAGGGGATTTG 961
Query 958 TAGAAGCAGAGAGAAAGATCATTATTTGATTTTCTCCAAAAAACTCTGTTCTCttttttt 1017
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 962 TAGAAGCAGAGAGAAAGATCTTTATTTGATTTTCTCCAAAAATCTCTGTTCCCTTTTTTT 1021
Query 1018 tttACTGGGTT-TTAAAGCTGTT-GAGTCTTTGATTCC-GTCTTCGTTGCTTGTTAGTAA 1074
|||| |||||| ||||||||||| ||||||||| |||| | ||||||||||||||||||
Sbjct 1022 TTTATTGGGTTATTAAAGCTGTTTGAGTCTTTGGTTCCTG-CTTCGTTGCTTGTTAGTA- 1079
Query 1075 TTAGTAATTAGGAAGTGAAGAAACAAAACTTAGAATTATTGCTTTGGATTCAACTCGTC- 1133
|| || ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1080 TT--TA----GGAAGTGAAGAAACAAAACTTTGAATTATTGCTTTCCATTCAACTCGTCA 1133
Query 1134 TAAGATTATCAT 1145
||| ||||||||
Sbjct 1134 TAA-ATTATCAT 1144
> AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor
3 | chr5:15409697-15411516 FORWARD LENGTH=1141
Length=1141
Score = 586 bits (317), Expect = 2e-166
Identities = 605/746 (81%), Gaps = 11/746 (1%)
Strand=Plus/Plus
Query 95 GGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGG 154
||||||||||||| ||| | || || ||||| || |||||||||||||| || |||||||
Sbjct 153 GGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAATGG 212
Query 155 TTGAATTCATGGAGAAAGTTGCGAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAGC 214
||||||||||||||||||||||||| |||||||| || || ||| | || ||||||
Sbjct 213 TTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAGAGA 272
Query 215 GAAACCT-CTTGTCTGTTGCGTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG 273
| || || || |||||||| ||||||||||| ||||| || || |||||||| |||||
Sbjct 273 GGAATCTTCTC-TCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGA 331
Query 274 ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAACGATGATCATGTTTCCATT 333
||||| ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||| | |||
Sbjct 332 ATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGCTATT 391
Query 334 ATCAAGGACTACAGAGGGAAGATCGAAACCGAACTCAGCAAAATCTGTGATGGAATACTC 393
|||||||| |||||||| ||||| ||| |||| || ||||||||||||||||| || |
Sbjct 392 ATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGATTTTG 451
Query 394 AATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCTGAGTCCAAAGTCTTTTAC 453
||| |||| || |||| ||| |||| |||| || ||||| || ||||| |||||
Sbjct 452 AATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTTTTAT 511
Query 454 CTCAAAATGAAAGGAGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGG 513
|| || ||||| || ||||| || ||||| ||||||||||||||| |||||||||| |||
Sbjct 512 CTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGAAAGG 571
Query 514 AAGGAATCTGCAGAGAGCACTCTGGTTGCTTACAAGTCAGCT-CAGGATATTGC-ACTTG 571
|| ||| |||| || |||||| |||||||||||||||| ||| | | | ||||| ||| |
Sbjct 572 AAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCG-ACATTGCCACT-G 629
Query 572 CTGATTTAGCTCCTACTCACCCGATTAGA-TTGGGACTTGCTCTTAACTTCTCTGTCTTC 630
|||| |||||||||||||||||||| || |||| ||||| || ||||||||||| ||
Sbjct 630 CTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGT-CTTGCACTCAACTTCTCTGTGTTT 688
Query 631 TACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGAT 690
||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 689 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGAT 748
Query 691 GAGGCTATTTCTGAGCTCGACACATTAGGAGAAGAATCATACAAAGACAGTACACTGATA 750
|| || || ||||| | || ||||| || || ||||||||||| ||||||||||||||
Sbjct 749 GATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATT 808
Query 751 ATGCAACTTCTCCGTGACAATCTGACCCTATGGAATTCTGACATCAATGATGAGGCGGGT 810
||||| ||||| | |||||||| || || |||| ||| || || | ||| || || ||
Sbjct 809 ATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGA 868
Query 811 GGTGATGAGATCAAGGAGGCGTCAAA 836
| ||||||| |||||||| |||||
Sbjct 869 G---ATGAGATTAAGGAGGCATCAAA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5