BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477486

Length=1145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory facto...  1773    0.0   
  AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3...   586    2e-166


> AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory factor 
7 | chr3:526437-528313 REVERSE LENGTH=1245
Length=1245

 Score = 1773 bits (960),  Expect = 0.0
 Identities = 1091/1152 (95%), Gaps = 18/1152 (2%)
 Strand=Plus/Plus

Query  1     TTTCGCGTCTCGAGCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGG-TTTGA  59
             ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct  4     TTTCGCGTCTCGACCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGGATCT-A  62

Query  60    AATGtttttttGATAACAGAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA  119
             || |  | | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  63    AAAGAGTGTGTGATAACATAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA  122

Query  120   GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAATTCATGGAGAAAGTTGCGAA  179
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  123   GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAGTTCATGGAGAAAGTTGCAAA  182

Query  180   GACTGTTGACACCGATGAGCTTACTGTCGAAGAGCGAAACCTCTTGTCTGTTGCGTACAA  239
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  183   GACTGTTGACACCGATGAGCTTACTGTCGAAGAGAGAAACCTCTTGTCTGTTGCTTACAA  242

Query  240   GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA  299
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  243   GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA  302

Query  300   AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGGAAGATCGA  359
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  303   AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGAAAGATCGA  362

Query  360   AACCGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC  419
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363   AACTGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC  422

Query  420   CACTGCATCTTTGGCTGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG  479
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423   CACTGCATCTTTGGCCGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG  482

Query  480   GTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGGAAGGAATCTGCAGAGAGCACTCTGGT  539
             |||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct  483   GTACCTTGCTGAGTTTAAGACTGGAGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTGGT  542

Query  540   TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCACCCGATTAG  599
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  543   TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCATCCGATTAG  602

Query  600   ATTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG  659
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603   ACTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG  662

Query  660   TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCTATTTCTGAGCTCGACACATTAGG  719
             |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct  663   TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCCATTTCTGAGCTGGATACATTAGG  722

Query  720   AGAAGAATCATACAAAGACAGTACACTGATAATGCAACTTCTCCGTGACAATCTGACCCT  779
             ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct  723   AGAAGAATCATACAAAGACAGTACGTTGATAATGCAACTTCTCCGTGACAATCTGACCCT  782

Query  780   ATGGAATTCTGACATCAATGATGAGGCGGGTGGTGATGAGATCAAGGAGGCGTCAAAACA  839
              ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  783   TTGGAACTCTGACATCAATGATGAGGCGGGCGGTGATGAGATCAAGGAGGCGTCAAAACA  842

Query  840   TGAGCCGGAAGAAGGGAAACCAGCAGAGACAGGGCAGTGACCagagagagagggagagaC  899
             |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  843   TGAGCCGGAAGAGGGGAAACCAGCTGAGACAGGGCAGTGACCAGAGAGAGAGGGAGAGAC  902

Query  900   ATTTCTGAGTATGTATGGTACGGATTTTCCAAAAAACATATGAT--GATTATGGTATTTG  957
             |||||| ||||||||||||| |||||||||||||| ||||||||  ||||| || |||||
Sbjct  903   ATTTCTAAGTATGTATGGTATGGATTTTCCAAAAA-CATATGATATGATTAGGGGATTTG  961

Query  958   TAGAAGCAGAGAGAAAGATCATTATTTGATTTTCTCCAAAAAACTCTGTTCTCttttttt  1017
             |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct  962   TAGAAGCAGAGAGAAAGATCTTTATTTGATTTTCTCCAAAAATCTCTGTTCCCTTTTTTT  1021

Query  1018  tttACTGGGTT-TTAAAGCTGTT-GAGTCTTTGATTCC-GTCTTCGTTGCTTGTTAGTAA  1074
             |||| |||||| ||||||||||| ||||||||| |||| | |||||||||||||||||| 
Sbjct  1022  TTTATTGGGTTATTAAAGCTGTTTGAGTCTTTGGTTCCTG-CTTCGTTGCTTGTTAGTA-  1079

Query  1075  TTAGTAATTAGGAAGTGAAGAAACAAAACTTAGAATTATTGCTTTGGATTCAACTCGTC-  1133
             ||  ||    ||||||||||||||||||||| |||||||||||||  |||||||||||| 
Sbjct  1080  TT--TA----GGAAGTGAAGAAACAAAACTTTGAATTATTGCTTTCCATTCAACTCGTCA  1133

Query  1134  TAAGATTATCAT  1145
             ||| ||||||||
Sbjct  1134  TAA-ATTATCAT  1144


> AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 
3 | chr5:15409697-15411516 FORWARD LENGTH=1141
Length=1141

 Score =  586 bits (317),  Expect = 2e-166
 Identities = 605/746 (81%), Gaps = 11/746 (1%)
 Strand=Plus/Plus

Query  95   GGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGG  154
            ||||||||||||| ||| | || || ||||| || |||||||||||||| || |||||||
Sbjct  153  GGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAATGG  212

Query  155  TTGAATTCATGGAGAAAGTTGCGAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAGC  214
            ||||||||||||||||||||||||| ||||||||    || || ||| | || |||||| 
Sbjct  213  TTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAGAGA  272

Query  215  GAAACCT-CTTGTCTGTTGCGTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG  273
            | || || ||  |||||||| ||||||||||| ||||| || || |||||||| ||||| 
Sbjct  273  GGAATCTTCTC-TCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGA  331

Query  274  ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAACGATGATCATGTTTCCATT  333
            ||||| ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||| | |||
Sbjct  332  ATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGCTATT  391

Query  334  ATCAAGGACTACAGAGGGAAGATCGAAACCGAACTCAGCAAAATCTGTGATGGAATACTC  393
            |||||||| |||||||| ||||| ||| |||| || ||||||||||||||||| ||  | 
Sbjct  392  ATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGATTTTG  451

Query  394  AATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCTGAGTCCAAAGTCTTTTAC  453
            ||| |||| ||  |||| ||| ||||  |||| ||    ||||| || ||||| ||||| 
Sbjct  452  AATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTTTTAT  511

Query  454  CTCAAAATGAAAGGAGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGG  513
            || || ||||| || ||||| || ||||| ||||||||||||||| |||||||||| |||
Sbjct  512  CTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGAAAGG  571

Query  514  AAGGAATCTGCAGAGAGCACTCTGGTTGCTTACAAGTCAGCT-CAGGATATTGC-ACTTG  571
            || ||| |||| || |||||| |||||||||||||||| ||| | | | ||||| ||| |
Sbjct  572  AAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCG-ACATTGCCACT-G  629

Query  572  CTGATTTAGCTCCTACTCACCCGATTAGA-TTGGGACTTGCTCTTAACTTCTCTGTCTTC  630
            |||| |||||||||||||||||||| ||  ||||  ||||| || ||||||||||| || 
Sbjct  630  CTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGT-CTTGCACTCAACTTCTCTGTGTTT  688

Query  631  TACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGAT  690
            ||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| ||||||
Sbjct  689  TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGAT  748

Query  691  GAGGCTATTTCTGAGCTCGACACATTAGGAGAAGAATCATACAAAGACAGTACACTGATA  750
            || || ||  ||||| | || ||||| || || ||||||||||| |||||||||||||| 
Sbjct  749  GATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATT  808

Query  751  ATGCAACTTCTCCGTGACAATCTGACCCTATGGAATTCTGACATCAATGATGAGGCGGGT  810
            ||||| |||||  | |||||||| || || |||| ||| || || | ||| || || || 
Sbjct  809  ATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGA  868

Query  811  GGTGATGAGATCAAGGAGGCGTCAAA  836
            |   ||||||| |||||||| |||||
Sbjct  869  G---ATGAGATTAAGGAGGCATCAAA  891



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56174409855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5