BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477486 Length=1145 Score E Sequences producing significant alignments: (Bits) Value AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory facto... 1773 0.0 AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 586 2e-166 > AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory factor 7 | chr3:526437-528313 REVERSE LENGTH=1245 Length=1245 Score = 1773 bits (960), Expect = 0.0 Identities = 1091/1152 (95%), Gaps = 18/1152 (2%) Strand=Plus/Plus Query 1 TTTCGCGTCTCGAGCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGG-TTTGA 59 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | | Sbjct 4 TTTCGCGTCTCGACCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGGATCT-A 62 Query 60 AATGtttttttGATAACAGAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 119 || | | | |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 63 AAAGAGTGTGTGATAACATAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 122 Query 120 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAATTCATGGAGAAAGTTGCGAA 179 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 123 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAGTTCATGGAGAAAGTTGCAAA 182 Query 180 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGCGAAACCTCTTGTCTGTTGCGTACAA 239 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 183 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGAGAAACCTCTTGTCTGTTGCTTACAA 242 Query 240 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 302 Query 300 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGGAAGATCGA 359 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 303 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGAAAGATCGA 362 Query 360 AACCGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 419 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AACTGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 422 Query 420 CACTGCATCTTTGGCTGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 479 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CACTGCATCTTTGGCCGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 482 Query 480 GTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGGAAGGAATCTGCAGAGAGCACTCTGGT 539 |||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||| Sbjct 483 GTACCTTGCTGAGTTTAAGACTGGAGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTGGT 542 Query 540 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCACCCGATTAG 599 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 543 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCATCCGATTAG 602 Query 600 ATTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 659 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 ACTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 662 Query 660 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCTATTTCTGAGCTCGACACATTAGG 719 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 663 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCCATTTCTGAGCTGGATACATTAGG 722 Query 720 AGAAGAATCATACAAAGACAGTACACTGATAATGCAACTTCTCCGTGACAATCTGACCCT 779 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 723 AGAAGAATCATACAAAGACAGTACGTTGATAATGCAACTTCTCCGTGACAATCTGACCCT 782 Query 780 ATGGAATTCTGACATCAATGATGAGGCGGGTGGTGATGAGATCAAGGAGGCGTCAAAACA 839 ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 783 TTGGAACTCTGACATCAATGATGAGGCGGGCGGTGATGAGATCAAGGAGGCGTCAAAACA 842 Query 840 TGAGCCGGAAGAAGGGAAACCAGCAGAGACAGGGCAGTGACCagagagagagggagagaC 899 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 843 TGAGCCGGAAGAGGGGAAACCAGCTGAGACAGGGCAGTGACCAGAGAGAGAGGGAGAGAC 902 Query 900 ATTTCTGAGTATGTATGGTACGGATTTTCCAAAAAACATATGAT--GATTATGGTATTTG 957 |||||| ||||||||||||| |||||||||||||| |||||||| ||||| || ||||| Sbjct 903 ATTTCTAAGTATGTATGGTATGGATTTTCCAAAAA-CATATGATATGATTAGGGGATTTG 961 Query 958 TAGAAGCAGAGAGAAAGATCATTATTTGATTTTCTCCAAAAAACTCTGTTCTCttttttt 1017 |||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| Sbjct 962 TAGAAGCAGAGAGAAAGATCTTTATTTGATTTTCTCCAAAAATCTCTGTTCCCTTTTTTT 1021 Query 1018 tttACTGGGTT-TTAAAGCTGTT-GAGTCTTTGATTCC-GTCTTCGTTGCTTGTTAGTAA 1074 |||| |||||| ||||||||||| ||||||||| |||| | |||||||||||||||||| Sbjct 1022 TTTATTGGGTTATTAAAGCTGTTTGAGTCTTTGGTTCCTG-CTTCGTTGCTTGTTAGTA- 1079 Query 1075 TTAGTAATTAGGAAGTGAAGAAACAAAACTTAGAATTATTGCTTTGGATTCAACTCGTC- 1133 || || ||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1080 TT--TA----GGAAGTGAAGAAACAAAACTTTGAATTATTGCTTTCCATTCAACTCGTCA 1133 Query 1134 TAAGATTATCAT 1145 ||| |||||||| Sbjct 1134 TAA-ATTATCAT 1144 > AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3 | chr5:15409697-15411516 FORWARD LENGTH=1141 Length=1141 Score = 586 bits (317), Expect = 2e-166 Identities = 605/746 (81%), Gaps = 11/746 (1%) Strand=Plus/Plus Query 95 GGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGG 154 ||||||||||||| ||| | || || ||||| || |||||||||||||| || ||||||| Sbjct 153 GGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAATGG 212 Query 155 TTGAATTCATGGAGAAAGTTGCGAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAGC 214 ||||||||||||||||||||||||| |||||||| || || ||| | || |||||| Sbjct 213 TTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAGAGA 272 Query 215 GAAACCT-CTTGTCTGTTGCGTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG 273 | || || || |||||||| ||||||||||| ||||| || || |||||||| ||||| Sbjct 273 GGAATCTTCTC-TCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGA 331 Query 274 ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAACGATGATCATGTTTCCATT 333 ||||| ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||| | ||| Sbjct 332 ATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGCTATT 391 Query 334 ATCAAGGACTACAGAGGGAAGATCGAAACCGAACTCAGCAAAATCTGTGATGGAATACTC 393 |||||||| |||||||| ||||| ||| |||| || ||||||||||||||||| || | Sbjct 392 ATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGATTTTG 451 Query 394 AATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCTGAGTCCAAAGTCTTTTAC 453 ||| |||| || |||| ||| |||| |||| || ||||| || ||||| ||||| Sbjct 452 AATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTTTTAT 511 Query 454 CTCAAAATGAAAGGAGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGG 513 || || ||||| || ||||| || ||||| ||||||||||||||| |||||||||| ||| Sbjct 512 CTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGAAAGG 571 Query 514 AAGGAATCTGCAGAGAGCACTCTGGTTGCTTACAAGTCAGCT-CAGGATATTGC-ACTTG 571 || ||| |||| || |||||| |||||||||||||||| ||| | | | ||||| ||| | Sbjct 572 AAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCG-ACATTGCCACT-G 629 Query 572 CTGATTTAGCTCCTACTCACCCGATTAGA-TTGGGACTTGCTCTTAACTTCTCTGTCTTC 630 |||| |||||||||||||||||||| || |||| ||||| || ||||||||||| || Sbjct 630 CTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGT-CTTGCACTCAACTTCTCTGTGTTT 688 Query 631 TACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGAT 690 ||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| |||||| Sbjct 689 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGAT 748 Query 691 GAGGCTATTTCTGAGCTCGACACATTAGGAGAAGAATCATACAAAGACAGTACACTGATA 750 || || || ||||| | || ||||| || || ||||||||||| |||||||||||||| Sbjct 749 GATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATT 808 Query 751 ATGCAACTTCTCCGTGACAATCTGACCCTATGGAATTCTGACATCAATGATGAGGCGGGT 810 ||||| ||||| | |||||||| || || |||| ||| || || | ||| || || || Sbjct 809 ATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGA 868 Query 811 GGTGATGAGATCAAGGAGGCGTCAAA 836 | ||||||| |||||||| ||||| Sbjct 869 G---ATGAGATTAAGGAGGCATCAAA 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56174409855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5