BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477488 Length=1670 Score E Sequences producing significant alignments: (Bits) Value AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repa... 2643 0.0 > AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair protein family | chr3:532808-536342 REVERSE LENGTH=1738 Length=1738 Score = 2643 bits (1431), Expect = 0.0 Identities = 1571/1639 (96%), Gaps = 7/1639 (0%) Strand=Plus/Plus Query 19 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCCTCTTCACCTACC 78 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 31 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCTTCTTCGCCTACC 90 Query 79 TACTCTCTTTCTCGAATTTATTTGCCGGCGGCGATCAATCCGAACGGGATTTTAGCCGGA 138 ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| || Sbjct 91 TACTCTCTTTCCCGAATTTATTTGCCGGCGGTGATCAATCAGAACGGGATTTTAGCCTGA 150 Query 139 GTAGTCGGTCACTGGGAAGGGAATTTGGCCGGTGAGAGAAGATGAAGATATTTGTGAAAA 198 ||| ||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 151 GTAATCGGTCACTGGGAAGAGAATTTCGACGGTGAGAGAAGATGAAGATATTTGTGAAAA 210 Query 199 CTCTCAAGGGGACTCACTTTGAGATCGAAGTAAAACTCGAGGATTCGGTTGCTGATGTGA 258 ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct 211 CTCTCAAGGGGACTCACTTCGAGATCGAAGTAAAACCCGAGGATTCGGTTGTTGATGTGA 270 Query 259 AGAAGAACATAGAGACTGTGCAGGGCGCAGATGTATATCCTGCTGCAAAACAGATGCTTA 318 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 271 AGAAGAACATAGAGAGTGTGCAGGGCGCAGATGTGTATCCTGCTGCAAAACAGATGCTTA 330 Query 319 TTCACCAAGGTAAAGTTCTTAAAGATGAGACTACTATTGAGGAAAACAAAGTTGCTGAGA 378 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 331 TTCACCAAGGTAAAGTGCTTAAAGATGAGACAACTATTGAGGAAAACAAAGTTGCTGAGA 390 Query 379 ACAGTTTTATTGTCGTAATGATGAACAAGAGTAAACCTGCTTCAACTGGAGCATCTAGTG 438 |||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 391 ACAGTTTTATTGTCATTATGATGAACAAGAGTAAACCTGCTTCAGCTGCAGCATCTAGTG 450 Query 439 CATCTGCTGGCACAGCGCAGGCCAAGTCGACACCTCCCTCAACATCACAGCCTTCAATTT 498 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 451 CATCTGCTGGCACATCGCAGGCCAAGTCGATACCTCCCTCAACATCACAGCCTTCAATTT 510 Query 499 CCCCTCAGACTCCAGCTTCTGTAGCAGCACCAGTGGCACCTGCACCGACACGTGCGCCAC 558 ||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||| Sbjct 511 CCCCTCAGACTCCAGCTTCTGTATCAGCACCAGTGGCACCTGCACCAACACGTCCACCAC 570 Query 559 CACCTG---C--C-CCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACACCTA 612 |||||| | | ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 571 CACCTGCACCGACACCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACCCCTA 630 Query 613 TACCTGAACCTGTACCTGCTACTATACCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 672 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 631 TACCTGAACCTGTACCTGCTACTATATCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 690 Query 673 CGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 732 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 691 TGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 750 Query 733 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGACACTG 792 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 751 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTG 810 Query 793 TTGTCCGTGCACTTCGTGCTGCATTTAACAACCCCGAAAGAGCTGTGGAATATCTTTATA 852 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 811 TTGTCCTTGCACTTCGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTATA 870 Query 853 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTGCTCCAGCTAGTGTCGGAC 912 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 871 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTCCTCCAGCTAGTGCCGGAC 930 Query 913 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 990 Query 973 ATGCAAATCCGCTAGACCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1032 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 ATGCAAATCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1050 Query 1033 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1110 Query 1093 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAGCAGAACCCAAACT 1152 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1111 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCCAAACT 1170 Query 1153 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1230 Query 1213 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290 Query 1273 AGGCGATTCAAGTCACACCTGAGGAACGCGAAGCAATTGAACGGCTTGAAGCGATGGGAT 1332 |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1291 AGGCGATTCAAGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGGAT 1350 Query 1333 TTGACAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1392 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1351 TTGAGAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1410 Query 1393 CAAACTATCTTCTAGATCACATGCATGAGTTCGAGGAATAACCTTCTTCAGTTTACTTTA 1452 |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct 1411 CAAACTATCTTCTAGATCACATGCATGAATTCGAGGAATAAGCTTCTTCAGATTACTTTA 1470 Query 1453 CCTACTCTCTATCTTTCCCATTGGTCCATATGTGTTACCTATATATTTGTGGG-TGCCAA 1511 ||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| |||||| Sbjct 1471 CCTACTCTCTATCTTTCGCATTGGTCCATATGTTTTAGCTATATATGTGTGGGATGCCAA 1530 Query 1512 GTCCATGATCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCGGTTTAAAATGGAGTT 1571 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1531 ATCCATGACCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCAGTTTAAAATGAAGTT 1590 Query 1572 TATCATCTGCTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATCTCCCGTTCCAGTTAT 1631 | |||| || |||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1591 TGTCATGTGTTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATATCTTGTTCCAGTTAT 1650 Query 1632 TTTTGTCAAATTGGGGACA 1650 |||||| ||||||||||| Sbjct 1651 TTTTGTTGAATTGGGGACA 1669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82529695980 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5