BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477491 Length=746 Score E Sequences producing significant alignments: (Bits) Value AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 959 0.0 AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 97.1 2e-19 > AT3G02555.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:539639-541503 REVERSE LENGTH=969 Length=969 Score = 959 bits (519), Expect = 0.0 Identities = 670/739 (91%), Gaps = 26/739 (4%) Strand=Plus/Plus Query 1 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAAGCAGATTAGAG-GTTCTTCTGTGGATA 59 ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct 33 TCACCCTTATCGCCGCTGTTTCGTCTTGAACAATCAGATTAG-GTGTTCTTCTGTGGATA 91 Query 60 AAAAATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGAATCGAGAGG 119 ||| |||||||||||||||||||||||||| || ||| |||||||||| ||||||||||| Sbjct 92 AAAGATGAATCATTGTAGCCTTCAGCAGAATGCATTCTTGTCTCGTGAAGAATCGAGAGG 151 Query 120 ATTTGTTCCTATCTATTGTTATCCAATGGACTCTGTTGTTTGTCCTAAGCCTCGTCGTGC 179 ||||||||||||||||| | ||||| |||||||||||||||| |||||||| |||||||| Sbjct 152 ATTTGTTCCTATCTATTCTCATCCAGTGGACTCTGTTGTTTGCCCTAAGCCCCGTCGTGC 211 Query 180 CAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGAGCTGATGATGTATG 239 |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 212 AAACAACGTTATTCGTCCCTTTAGATTACATTTTAGTCTTTCAGGAGCTGATGATGTATG 271 Query 240 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 TGATTCTAAAGCCGGGGAAGATCTTTTGGACATATTTCGTAGAAAGGAATCAGTATCATC 331 Query 300 TACATCACCCCCATTTTTTCTTGGGTCTCCCCCGAGCCGAGCAGCAAACCCGTTAGCTCA 359 || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 332 TAGATCACCCCCATTTTTCCTTGGGTCTCCCCCTAGCCGAGCAGCAAACCCGTTAGCTCA 391 Query 360 AGATGCACGCTTTGGAGTTGAGAAACTCAACACTGTCTCACCCTCACTCTCACCTCGTGT 419 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | | Sbjct 392 AGATGCACGCTTTGGAGATGAGAAACTCAACACTGTCTCACCCTCACTCTCCCCTCTTCT 451 Query 420 CAAAGCAGGA----G-G--AGGAG-G-TTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 470 | | | | | | | | || | ||||||||||||||||||||||||||||||||| Sbjct 452 CCCATCTGCATCTCGTGTTAAAAGTGGTTGTGGTAGAATGAAGTTTGGGGTGAAACCAGC 511 Query 471 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCAAAACTCAAGCATTCC 530 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || Sbjct 512 AACTGTTAGAGTAGAAGGGTTTGATTGCTTGAACAGGGACCGCCCAAACTCAAGTATCCC 571 Query 531 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAG-ATTCACAAAGTGTACATAAGATC 589 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 572 TGCCATGGCCTAGAAAGAAGAAGAAGGAACAAAGAGGATTCACAAAGTGTACATAAAATC 631 Query 590 CAGAATCAA-GACT--AtttttttGAAGCAAGTATATATATTTTTGCAGAAGAAGAGGGG 646 |||| |||| |||| ||||||| |||| ||||||||||| ||||||||||||||||| Sbjct 632 CAGACTCAAAGACTCCATTTTTT-GAAG-AAGTATATATAGTTTTGCAGAAGAAGAGGAA 689 Query 647 AAGGAAGATCAAAGTTCACTCAAGGCTTTTACCGCAGTTTTCTG--AT---GA-G-G-TT 698 ||||||||| || | || |||||| ||||||||||||||||||| || || | | || Sbjct 690 AAGGAAGATTAACGATCGCTCAAG-CTTTTACCGCAGTTTTCTGTGATTATGATGAGGTT 748 Query 699 CAGTGGTGTGTATATATAT 717 || || ||||||||||||| Sbjct 749 CAATGTTGTGTATATATAT 767 > AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5260604-5262840 REVERSE LENGTH=1474 Length=1474 Score = 97.1 bits (52), Expect = 2e-19 Identities = 186/244 (76%), Gaps = 35/244 (14%) Strand=Plus/Plus Query 59 AAAAA-ATGAATCATTGTAGCCTTCAGCAGAACGCCTTCATGTCTCGTGACGA-ATCGA- 115 ||||| ||||||||||| | |||||||||||||||||||||||||||||| || || || Sbjct 365 AAAAAGATGAATCATTGCAACCTTCAGCAGAACGCCTTCATGTCTCGTGAGGAGAT-GAT 423 Query 116 GAGGATTTGTTCC-TA----TCTA-TTGTTA-TCC-AATGGACTCTGTTGT-TTG-TCCT 165 | ||||||| || || ||| ||||| ||| || | ||| | || ||| | | Sbjct 424 G-GGATTTGA-CCGTAAGGATCTTGTTGTTTGTCCTAA-GC-CTC-GACGTGTTGGTT-T 477 Query 166 AAGCCTCGTCGTGCCAACAACGTTATTCGTCCCCTTAGATTACATTTTAGTCAATCAGGA 225 | | ||| | | ||||||||||||||||| |||||||||||| | |||||| | | | Sbjct 478 A--C-TCG-C---C-AACAACGTTATTCGTCCTCTTAGATTACATATGAGTCAAGCTGCA 529 Query 226 GCTGA-TGATGTATGTGATTCTAAAGCCGGGGAAGATCTTTTGGACAT-ATTTCGTAGAA 283 || || | ||| ||||||||||||| || | || |||||||| || ||| ||||||| Sbjct 530 GCCGACT--TGT--GTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAATCATT-CGTAGAA 584 Query 284 AGGA 287 |||| Sbjct 585 AGGA 588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36218819987 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5