BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477495
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:54690... 1465 0.0
AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily pr... 824 0.0
> AT3G02580.1 | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:546903-548795
FORWARD LENGTH=1171
Length=1171
Score = 1465 bits (793), Expect = 0.0
Identities = 877/919 (95%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 1 ATCAAGCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTTAA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 86 ATCAATCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTCAC 145
Query 61 ATGGCAGCGGACAATGCGTATCTGATGCAGTTTGTCGACGAAACCTCTTTTTACAACCGA 120
||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 146 ATGGCGGCGGATAATGCTTATCTGATGCAGTTTGTTGACGAAACCTCTTTTTACAACCGA 205
Query 121 ATCGTTTTGAGTCATCTTTTGCCGGCGAATCTGTGGGATCCCTTACCTCATTTTCTCCAG 180
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 206 ATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCCTTACCTCATTTTCTCCAG 265
Query 181 ACATGGCTTCGAAATTACCTCGCCGGAACCCTACTCTACTTCATCTCCGGCTTCCTCTGG 240
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 266 ACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTCATCTCCGGTTTCCTCTGG 325
Query 241 TGCTTCTACATCTATTACCTCAAAATCAACGTTTACCTTCCCAAAGATGCCATTCCTACA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 326 TGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCCCAAAGATGCAATTCCTACA 385
Query 301 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCTTGGTATACTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 386 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCATGGTACACTCTT 445
Query 361 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAGTGTTTCGCTAGCATA 420
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 446 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAATGTTTTGCTAGCATA 505
Query 421 GGCGAATTCGGCTGGATCCTCTATTTTGTTTACATTGCCATCTATCTTGTTTTCGTTGAG 480
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 506 GGCGAATTCGGCTGGATTCTGTATTTTGTTTACATCGCCATCTATCTTGTTTTCGTTGAG 565
Query 481 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGATATCAAGCCTCTCTATAAGTATCTC 540
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 566 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCTCTCTATAAGTATCTC 625
Query 541 CATGCGACCCATCATATCTACAACAAGCAAAATACACTCTCTCCATTTGCCGGGCTTGCG 600
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 626 CATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCATTTGCCGGGCTTGCA 685
Query 601 TTTCACCCAGTAGATGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTTCACCCAGTAGACGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 745
Query 661 CCAATTCATTTCACAACCCATATAGGTCTTTTGTTCATGGAAGCGATATGGACAGCGAAC 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 746 CCAATTCATTTCACAACTCATATAGGTCTTTTGTTCATGGAAGCGATATGGACGGCGAAC 805
Query 721 ATCCATGACTGCATCCACGGCAACATCTGGCCTGTAATGGGTGCAGGATACCATACTATA 780
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 806 ATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGGTGCAGGATACCATACGATA 865
Query 781 CACCACACAACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CACCACACGACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 925
Query 841 GGCTCCCTTAAGGACCCTCTTTTAGAAGAAGATGGCAACAAAGATAGCTCCAAGAAAGCT 900
||||| |||| ||| ||||| ||||||||||||| ||||||||| |||| |||||||||
Sbjct 926 GGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACAACAAAGACAGCTTCAAGAAAGCA 985
Query 901 GAGTGAGAATGCCCACTTG 919
|||||||||||||||||||
Sbjct 986 GAGTGAGAATGCCCACTTG 1004
> AT3G02590.1 | Symbols: | Fatty acid hydroxylase superfamily
protein | chr3:549340-550553 FORWARD LENGTH=840
Length=840
Score = 824 bits (446), Expect = 0.0
Identities = 669/776 (86%), Gaps = 17/776 (2%)
Strand=Plus/Plus
Query 83 TGATGCAGTTTGTCGACGAAACCTCTTTTTACAACCGAATCGTTTTGAGTCATCTTTTGC 142
|||| ||| | ||| | || |||||||||||||||||||| ||| ||||||| |||||||
Sbjct 27 TGAT-CAGATCGTCAATGAGACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGC 85
Query 143 CGGCGAATCTGTGGGATCCCTTACCTCATTTTCTCCAGACATGGCTTCGAAATTACCTCG 202
||| |||||| ||||| || ||||| ||||| |||||||||||||| || || |||||||
Sbjct 86 CGGTGAATCTATGGGAACCTTTACCACATTTCCTCCAGACATGGCTCCGGAACTACCTCG 145
Query 203 CCGGAACCCTACTCTACTTCATCTCCGGCTTCCTCTGGTGCTTCTACATCTATTACCTCA 262
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 146 CCGGAAACATACTCTACTTCATCTCCGGCTTCCTCTGGTGCTTCTACATCTATTACCTTA 205
Query 263 AAATCAACGTTTACCTTCCCAAAGA-TGCCATTCCTACAATAAAGGCTATGCGTTTGCAA 321
|| ||||||||||| | |||||||| | |||||||||| | |||||| |||| |||||||
Sbjct 206 AACTCAACGTTTACGTCCCCAAAGAAT-CCATTCCTACGAGAAAGGCAATGCTTTTGCAA 264
Query 322 ATGTTTGTGGCAATGAAGGCTATGCCTTGGTATACTCTTCTTCCAACTGTCTCCGAG-AG 380
|| | |||||||||||||||||||||||||| |||||||||||| ||||||| ||| |
Sbjct 265 ATATACGTGGCAATGAAGGCTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA- 323
Query 381 TATGATTGAACGTGGTTGGACCAAGTGTTTCGCTAGCA-TAGGCGAATTCGGCTGGATCC 439
|||||| || | |||||||||||| |||| | ||| || | | | | ||| |||| |||
Sbjct 324 TATGATCGAGCATGGTTGGACCAAATGTTACTCTA-CACTTGACCATTTCAACTGGTTCC 382
Query 440 TCTATTTTGTTTACATTGC-CATCTATCTTGTTTTCGTTGAGTTTG-GTATTTATTGGAT 497
||| ||| | ||||| || | ||||||||||||| ||||||||| | ||||||||| |
Sbjct 383 TCTGTTTCCTCTACATAGCTC-TCTATCTTGTTTTAGTTGAGTTTATG-ATTTATTGGGT 440
Query 498 GCACAGAGAGCTTCATGATATCAAGCCTCTCTATAAGTATCTCCATGCGACCCATCATAT 557
|||| |||||||||||| || || |||||||||| |||||||||| |||||||||||
Sbjct 441 TCACAAAGAGCTTCATGACATTAAATTTCTCTATAAGCATCTCCATGCTACCCATCATAT 500
Query 558 CTACAACAAGCAAAATACACTCTCTCCATTTGCCGGGCTTGCGTTTCACCCAG-TAGATG 616
|||||||||||||| ||||||||||||||||||||||| || || || || | | || |
Sbjct 501 GTACAACAAGCAAAACACACTCTCTCCATTTGCCGGGCTCGCATTCCATCC-GCTGGACG 559
Query 617 GGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTGCCAATTCATTTCACAA 676
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||| ||
Sbjct 560 GGATACTTCAGGCTATACCGCACGTGATAGCGCTGTTTATAGTGCCGATTCATCTCATAA 619
Query 677 CCCATAT-AGGTCTTTTGTTCATGGAAGCGATATGGACAGCGAA-CATCCATGACTGCAT 734
| ||| | || ||||||||| |||||| |||||||||||| || ||||||||| |||||
Sbjct 620 CACATCTGAG-TCTTTTGTTTTTGGAAGGGATATGGACAGC-AAGCATCCATGATTGCAT 677
Query 735 CCACGGCAACATCTGGCCTGTAATGGGTGCAGGATACCATACTATACACCACACAACATA 794
|| || |||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 678 ACATGGTAACATCTGGCCTATAATGGGTGCAGGATACCATACCATACACCATACAACATA 737
Query 795 CAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 850
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 738 CAAGCATAACTATGGTCATTATACCATATGGATGGACTGGATGTTTGGCTCTCTTA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5