BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477497 Length=1546 Score E Sequences producing significant alignments: (Bits) Value AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphata... 2141 0.0 AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 78.7 2e-13 > AT3G02600.1 | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:551351-554671 FORWARD LENGTH=1538 Length=1538 Score = 2141 bits (1159), Expect = 0.0 Identities = 1451/1578 (92%), Gaps = 76/1578 (5%) Strand=Plus/Plus Query 1 GATTAGATTGTCCCTA-GAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTG 59 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTAGATTGTCCCTAGGAGTCACTGTTATCGCTCTTTCAATTACTGTAATGTTGAATTT 60 Query 60 GGGTTTCATCTACTAAATAAGATGAAGTTTCTTGTCTCTTTCTG----------TC---- 105 |||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 61 GGGTTTCATCTACTAACTAAGATGAAGTTTCTTGTCTCTTTCTGTCTCCCTCTTTCTTAA 120 Query 106 -T-C-C-CTA--TTTC--TTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTTAAGTGAT 157 | | | ||| |||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 TTCCTCTCTACTTTTCGGTTAATTGCTCCTCTTCAGCTAACTTTGGGGCTTTAAAGTGAT 180 Query 158 ACAATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 217 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGGATGGCTCGCTTCAGTTTTCCTTGTTTTCCAAATTTTGGGGGTTTTAATCAGGCTGTG 240 Query 218 ACAAATCGAGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 277 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACAAATCGGGGGCCTGAGATTTCAGAAACTGCTGATAATTGGGTCTCACCATCTGACATT 300 Query 278 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTTGGCGCTCAC 337 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 301 CCACTCATAGAACCTAATAGTAAAGAGCACAGGATGAGAGAGGCACAGCTAGGCGGTCAC 360 Query 338 ACTGTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 397 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACTCTGAGGTCCCATGGAATGACTGTTGCAAGGACTCACATGCATGATTGGATCATTCTC 420 Query 398 GTGTTACTTGTTATTCTTGAGTGCGTACTCCTTATAATCCACCCGTTTTATCGCTTTGTT 457 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 421 GTGTTACTTGTTATTCTCGAGTGTGTACTCCTTATAATCCACCCATTTTATCGCTTTGTT 480 Query 458 GGGAAAGATATGATGACTGATCTCAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 517 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 481 GGTAAAGATATGATGACTGATCTAAGTTACCCGTTAAAGAGTAACACCGTACCAATTTGG 540 Query 518 TCTGTCCCGGTGTATGCGATGCTGTTACCTTTGGTAGTCTTCATATTTATCTACTTCCGT 577 ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 541 TCTGTCCCGGTATATGCGATGCTGTTACCTTTGGTAATCTTCATCTTTATCTACTTCCGT 600 Query 578 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGAAGAGATGTTTATGATCTTCATCACGCGGTGCTAGGTCTCTTATACTCTGTTCTGGTG 660 Query 638 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACAGCAGTACTTACCGATGCAATAAAGAATGCAGTTGGTCGACCACGTCCTGACTTCTTC 720 Query 698 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TGGCGTTGTTTTCCAGATGGCAAAGCTCTTTATGATAGCCTTGGAGATGTTATATGCCAT 780 Query 758 GGTGATAAAAGCGTCATAAGGGAAGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGG 817 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct 781 GGTGATAAAAGCGTCATAAGGGAAGGTCACAAAAGCTTTCCAAGTGGACACACGTCATGG 840 Query 818 TCTTTTGCGGGTCTGGGATTTCTTTCGCTGTACTTATCGGGAAAGATTCAAGCATTTGAT 877 |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 TCTTTTTCGGGTCTCGGATTTCTTTCGCTTTACTTATCGGGAAAGATTCAAGCATTTGAC 900 Query 878 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 937 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GGTAAAGGCCACGTTGCAAAGCTATGCATAGTCATACTCCCTTTGCTATTTGCAGCTCTT 960 Query 938 GTGGGTATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 997 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GTCGGCATTTCCCGTGTTGATGACTATTGGCATCATTGGCAAGACGTCTTTGCAGGAGGC 1020 Query 998 TTGCTAGGT-TTGTTTTCTCTCTCTACTCAAAAAGGTCTTGTGATCTGTTATCTCCAATT 1056 ||||||||| ||| | ||||||| || ||| || |||| | | |||| Sbjct 1021 TTGCTAGGTCTTG----CGATCTCTAC--AA-----TCT-GTTATCT-T---C---AATT 1061 Query 1057 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 TTTCCCGCCACCATATCACACCGAAGGTTGGGGACCATATGCTTACTTCCAAGTGTTGGA 1121 Query 1117 GGCGGCGAGAGTGCAAGGAACCGCGAATGGAGCAGTGCAGCAGCCACC-CC--AAGTTGA 1173 ||| ||||||||||||||| | ||||||||||||||||||||||| || || ||||| | Sbjct 1122 GGCTGCGAGAGTGCAAGGAGCAGCGAATGGAGCAGTGCAGCAGCCGCCGCCCCAAGTTAA 1181 Query 1174 TAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTGT 1233 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1182 CAACGGTGAAGAAGAAGACGGTGGGTTTATGGGTTTACATTTGGTGGATAATCCGACTAT 1241 Query 1234 GAGGAGAGAAGAAGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1293 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 GAGGAGAGAAGAGGATGTAGAAACTGGTAGAGGCTGAGATGAAGAAACTCTGAAGCTGGT 1301 Query 1294 TTGGTTACTTCTTAGGACACTTTCTCTTGTTCTTCTTGATTCTTTGTTTGACTACTTAAG 1353 |||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||| || Sbjct 1302 TTGGTTACTTGTTAGGACACTTTCTCTTGTTCTT-TTGATTCTTTGTTGGACAACTTTAG 1360 Query 1354 TAGATTTCTGTAAGATAACTTAGTAACAACTACAATCgtttggttttggttttggttttg 1413 ||||||||| |||||||||| | | || | ||||||||||||||||||||||| Sbjct 1361 TAGATTTCTCTAAGATAACT-A--A-----TAGAGTCGTTTGGTTTTGGTTTTGGTTT-- 1410 Query 1414 gtttAAATGGATGACCGGTATTTATGGGTCCGGTATTGGTATCCGTTAAAGTTTATGCTT 1473 ||||||||||||||| ||||||| |||||||||||| ||||||||||||| || Sbjct 1411 ----AAATGGATGACCGGT-TTTATGGTTCCGGTATTGGTG---GTTAAAGTTTATG-TT 1461 Query 1474 TTT-AA----GTTAACTGGATAAATGTAGCTTTATTATTTTTTCAATATTTTAAGAATTG 1528 ||| || ||| |||||||||||||||||||||| || |||||||||||| |||| Sbjct 1462 TTTCAAAAAAGTTCACTGGATAAATGTAGCTTTATT-TT----CAATATTTTAAGGATTG 1516 Query 1529 AAATTGGATTTGAACTTA 1546 |||| ||||||||||||| Sbjct 1517 AAATCGGATTTGAACTTA 1534 > AT3G18220.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr3:6247914-6249960 FORWARD LENGTH=1264 Length=1264 Score = 78.7 bits (42), Expect = 2e-13 Identities = 267/370 (72%), Gaps = 37/370 (10%) Strand=Plus/Plus Query 555 TCTTCATA-TTTATCTACTT-CCGTCGAAGAGATGTTTATGATCTTCATCACGCGGTGCT 612 |||||||| | || ||| || | |||||||||||||||||||||||||||||| | || Sbjct 421 TCTTCATAGTGTA-CTA-TTACTATCGAAGAGATGTTTATGATCTTCATCACGCCATTCT 478 Query 613 AGGTCTCTTATACTC-TGTTCTGGTGACAGCAGT-ACTTACCGATGCAAT-AAAGAATGC 669 ||| || || ||| ||| || ||||| | ||| || || ||| | || ||||| || Sbjct 479 CGGTATCGGATTCTCATGT-CTTGTGACTGGAGTCACC-ACTGATTCCATCAAAGAC-GC 535 Query 670 AGTTGGTCGACCACGTCCTGACTTCTTCTGGCGTTGTTTTCC-AGATGGCAAAGCTC--T 726 || ||| | ||||| ||| ||||||| | || |||||||| | |||| ||| | | Sbjct 536 GGTCGGTAGGCCACGCCCTAACTTCTTTTACCGATGTTTTCCCA-ATGGTAAACCGAAAT 594 Query 727 TT-AT--G-ATAGCCTTGGAGATGTTATATGCCATGGTGATAAAA-GCGTCAT-AAGGGA 780 || || | ||| | | | |||||| | || ||||| | ||||| | | || || | | Sbjct 595 TTCATCCGGATA-C-TAAG-GATGTTGTGTGTCATGGAGTTAAAAAGA-TAATCAAAG-A 649 Query 781 AGGGCACAAAAGCTTCCCAAGCGGACACACCTCTTGGTCTTTTGCGGGTCTGGGATTTCT 840 ||| |||| || ||||| || || ||||| || ||||| || || ||| | |||| Sbjct 650 AGGTTACAAGAGTTTCCCTAGTGGTCACACTTCATGGTCATTCGCTGGTTTAAC-TTTCC 708 Query 841 TT-CGCTG-TACTTATCGGG-AAAGATTCAA-G-CATTTGATGGTAA-AGGCCACGTTGC 894 | || || ||||||||||| ||| || ||| | | ||||| | || ||| ||||| || Sbjct 709 TAGCG-TGGTACTTATCGGGTAAA-AT-CAAAGTC-TTTGACAG-AAGAGGTCACGTGGC 763 Query 895 AAAGCTATGC 904 ||||||||| Sbjct 764 GAAGCTATGC 773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76304828400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5