BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477531
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02870.1 | Symbols: VTC4 | Inositol monophosphatase family p... 1334 0.0
> AT3G02870.1 | Symbols: VTC4 | Inositol monophosphatase family
protein | chr3:627512-629845 REVERSE LENGTH=1209
Length=1209
Score = 1334 bits (722), Expect = 0.0
Identities = 813/857 (95%), Gaps = 5/857 (1%)
Strand=Plus/Plus
Query 67 AAAGCATCACTC--TTCCTCCTT-TCATCGAAAATGGCGGACAATGATTCTCTAGATCAG 123
|||||||||||| ||| | ||| || |||||||||||||||||||||||||||||||||
Sbjct 133 AAAGCATCACTCTTTTCGT-CTTCTC-TCGAAAATGGCGGACAATGATTCTCTAGATCAG 190
Query 124 TTCTTGGCTGCCGCCATTGATGCCGCTAAAAAAGCTGGACAGATTATTCGTAAAGGGTTT 183
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 191 TTTTTGGCTGCCGCCATTGATGCCGCTAAAAAAGCTGGACAGATCATTCGTAAAGGGTTT 250
Query 184 TACGAGACCAAACATGTTGAACACAAAGGCCAGGTGGATTTGGTGACAGAGACTGATAAA 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 TACGAGACTAAACATGTTGAACACAAAGGCCAGGTGGATTTGGTGACAGAGACTGATAAA 310
Query 244 GGATGTGAAGAACTCGTGTTTAACCATCTCAAGCAGCTTTTTCCCAATCACAAGTTCATA 303
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 311 GGATGTGAAGAACTTGTGTTTAATCATCTCAAGCAGCTCTTTCCCAATCACAAGTTCATA 370
Query 304 GGAGAAGAAACTACAGCTGCATATGGTGTGACAGAATTAACAGACGAGCCAACTTGGATT 363
|||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||
Sbjct 371 GGAGAAGAAACTACAGCTGCATTTGGTGTGACAGAACTAACTGACGAACCAACTTGGATT 430
Query 364 GTTGATCCTCTTGATGGAACAACAAATTTCGTTCACGGGTTCCCTTTTGTGTGTGTTTCC 423
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 431 GTTGATCCTCTTGATGGAACAACCAATTTCGTTCACGGGTTCCCTTTCGTGTGTGTTTCC 490
Query 424 ATTGGACTTACGATTGGAAAAGTCCCTGTGGTTGGCGTTGTTTATAATCCTATTATGGAT 483
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 491 ATTGGACTTACGATTGGAAAAGTCCCTGTTGTTGGAGTTGTTTATAATCCTATTATGGAA 550
Query 484 GAGCTATTCACCGGTGTCCAAGGGAAAGGAGCATTCTTGAATGGAAAGCCAATTAAAGTG 543
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 551 GAGCTATTCACCGGTGTCCAAGGGAAAGGAGCATTCTTGAATGGAAAGCGAATCAAAGTG 610
Query 544 TCAACTCAGAGCGAACTTGTAACCGCTTTGCTCGTAACAGAGGCGGGTACTAAACGTGAT 603
||| |||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 611 TCAGCTCAAAGCGAACTTTTAACCGCTTTGCTCGTGACAGAGGCGGGTACTAAACGAGAT 670
Query 604 CAAGCTACATTAGATGATACAACCAATAGAATCAACAGTTTGCTAACCAAGGTTAGGTCC 663
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 671 AAAGCTACATTAGACGATACAACCAACAGAATCAACAGTTTGCTAACCAAGGTCAGGTCC 730
Query 664 CTTAGGATGAGTGGCTCGTGTGCACTGGACCTCTGTGGCGTTGCGTGTGGAAGGGTTGAT 723
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CTTAGGATGAGTGGTTCGTGTGCACTGGACCTCTGTGGCGTTGCGTGTGGAAGGGTTGAT 790
Query 724 ATCTTCTATGAACTCGGTTTCGGTGGTCCATGGGACATTGCAGCCGGAATTGTAATCGTT 783
|||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 791 ATCTTCTACGAGCTCGGTTTCGGTGGTCCATGGGACATTGCAGCAGGAATTGTTATCGTG 850
Query 784 AAAGAAGCTGGTGGACTCATTTTTGATCCATCCGGTAAAGATTTGGACATTACATCGCAG 843
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 851 AAAGAAGCTGGTGGACTCATCTTTGATCCATCCGGTAAAGATTTGGACATAACATCGCAG 910
Query 844 AGGATCGCGGCTTCCAACTCTTCTCTCAAAGAGTTATTCGCAGAGGCGTTGCGGCTTACA 903
|||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||
Sbjct 911 AGGATCGCGGCTTCAAACGCTTCTCTCAAGGAGTTATTCGCTGAGGCGTTGCGGCTTACA 970
Query 904 GGGGCATGAAGTCATCT 920
|||||||||||||||||
Sbjct 971 GGGGCATGAAGTCATCT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44959561565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5