BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477533
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02875.1 | Symbols: ILR1 | Peptidase M20/M25/M40 family prot... 2231 0.0
AT5G56650.1 | Symbols: ILL1 | IAA-leucine resistant (ILR)-like ... 99.0 1e-19
> AT3G02875.1 | Symbols: ILR1 | Peptidase M20/M25/M40 family protein
| chr3:631913-634074 FORWARD LENGTH=1624
Length=1624
Score = 2231 bits (1208), Expect = 0.0
Identities = 1354/1426 (95%), Gaps = 4/1426 (0%)
Strand=Plus/Plus
Query 2 aaaaaaaaaCAGAATGAATTTCTCAGGGAGcttctttctcttctgcgtcaccttcttctt 61
|||| ||| ||||||| |||||||||||||||||||| || ||| ||| |||||||||||
Sbjct 68 AAAAGAAATCAGAATGGATTTCTCAGGGAGCTTCTTTGTCATCTTCGTTACCTTCTTCTT 127
Query 62 tctccc-ccttctgtcttTAGCTGGGAGCTATGATTCTGGTTCGGGTCTCGAGTCACTCG 120
|||||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 128 TCTCCCTCC-TCTGTCTTCAGCTGGGAGCTACGATTCTGGTTCGGGTCTCGAGTCACTCG 186
Query 121 CTCGTGGGATGCTGGATTCAGCGAAGGATCCTGAGTTCTTCGAGTGGATGAGAGGAATTA 180
|||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 187 CTCGCGGGATGCTTCATTCAGCCAAGGATCCTGAGTTCTTCGAGTGGATGAGAGGAATTA 246
Query 181 GGAGAAAAATTCACGAGAACCCGGAGACAGGGTTTCAGGAGTTCAAAACGAGTCAACTTG 240
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 247 GGAGAAAGATTCATGAGAACCCAGAGACAGGGTTTCAGGAGTTCAAAACGAGTCAACTCG 306
Query 241 TTCGAGACGAGCTTGACTCGCTCGGAGTGAAGTATAAGTATCCTGTGGCGAAGACTGGTG 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 307 TTCGAGACGAGCTTGACTCGCTTGGAGTGAAGTATAAGTATCCTGTGGCGAAGACTGGCG 366
Query 301 TCGTGGCTTGGATCGGATCCGGTTCGATGCCTGTTTTCGGACTTAGAGCCGACATGGACG 360
|||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 367 TCGTCGCTTGGATCGGATCCTGTTCGAAACCTGTTTTCGGACTTAGAGCCGACATGGACG 426
Query 361 CACTTCCGTTACAGGAATTAGTGGAGTGGGAATCGAAGAGTAAAGTAGATGGAAAGATGC 420
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 427 CACTTCCGTTACAGGAATTAGTGGAATGGGAATCGAAAAGTAAAGTAGATGGAAAGATGC 486
Query 421 ATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAAGCTTCTTCAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAAGCTTCTTCAAA 546
Query 481 ACAGAAAACACCTCATCAAGGGGACTGTGAAACTTGTGTTTCAACCAGGCGAGGAAGGTT 540
|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 547 CCACAAAACACCTCATCAAGGGGACAGTAAAACTTGTGTTTCAACCAGGCGAGGAAGGTT 606
Query 541 ATGCAGGTGCTTATGAAATGCTAAAAGACGAGATTCTAGACGACTTAGATGGGATTCTCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 ATGCAGGTGCTTATGAAATGCTAAAAGACGAGATTCTAGACGACTTAGATGGGATACTCA 666
Query 601 GCGTTCACGTCTTTCCGTCGATCCCATCGGGTGGTATTGGCTCTAGGCCTGGGACCGTTC 660
| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 667 GTGTTCATGTCTTTCCATCGATCCCATCAGGTGGTATTGGTTCTAGGCCTGGGACCGTTC 726
Query 661 TTGCAGGTGCAGGATTGTTTACAGTCACGGTTCACGGTCAAGGTAGCCACGCAGCTACAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TTGCAGGTGCAGGATTGTTTACAGTCACGGTTCACGGTCAAGGTAGCCACGCAGCTACAC 786
Query 721 CGCATTTCTCTAAAGACCCGGTTCTTGCAGCTTCTTCCACTGTTGTTGCCTTGCAGCAGA 780
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 787 CGCACTTCTCTAAAGACCCGGTTCTTGCAGCTTCTTCCGCTGTTGTTGCCTTGCAACAGA 846
Query 781 TTGTTTCGCGGGAAATGGATCCACTCGAAGCCGGTGTGGTTACAGTTGGATACATTGAAG 840
|||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 847 TTGTTTCGCGGGAACTGGATCCACTCGAAGCTGGTGTGGTTACAGTTGGATATATTGAAG 906
Query 841 GAGGTCATGCTCAAAATGTAATACCGCAGAGTGCGAAATTCGGAGGTACTTTCAGAAGCT 900
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 907 GAGGTCATGCTCAAAACGTAATACCGCAGAGTGCGAAATTTGGAGGTACTTTCAGAAGCT 966
Query 901 TAAGCAACGATGGGCTTCTATTCATTAAAAGACGGATCAGAGAGATTTCGGAGGCACAAG 960
|||||||||||||||||||||| || |||||||||||| ||||||||| ||||||||||
Sbjct 967 TAAGCAACGATGGGCTTCTATTTATCCAAAGACGGATCAAAGAGATTTCAGAGGCACAAG 1026
Query 961 CATCGGTGTACCGATGCAAAGCAGAAGTAAATTTTGAAGAGAAAAAGCCGTCGCTTCACC 1020
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1027 CATCGGTATACCGATGCAAAGCAGAAGTAAACTTCGAAGAGAAAAAGCCGTCGCTTCACC 1086
Query 1021 CGGTAATGAACAACGACGAGGGCTTATACGAGCACGGTAAAAAAGTAGCGGAAGCGATGA 1080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CGGTAATGAATAACGACGAGGGCTTATACGAGCACGGTAAAAAAGTAGCGGAAGCGATGA 1146
Query 1081 TTGGAAAGAATAACTTCCATGATTTCCCGGTGACAATGGGAGGAGAAGATTTCAGCTTCT 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1147 TTGGAAAGAATAACTTCCATGATTTCCCGGTGACAATGGGAGGAGAGGATTTCAGCTTCT 1206
Query 1141 TCACTCAAAAGACGAAGGCTGCGATTTTCGTGCTGGGGATAAAGAATGAGACGCTAGGCG 1200
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1207 TCACTCAAAAGACTAAGGCTGCGATTTTCGTGCTGGGGGTAAAGAATGAGACGCTAGGCG 1266
Query 1201 CTGGTAAGCCGCTTCACTCTCCTTACTTCTTTGTTGATGAAGAAGCTCTTCCTGTTGGGG 1260
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CTGGTAAGCCGCTTCACTCGCCTTACTTCTTTGTTGATGAAGAAGCTCTTCCTGTTGGGG 1326
Query 1261 CTGCTCTTCACGCAGCCATGGCAGTTTCTTATTTGGATAAACATGGTCATGGCCATGACG 1320
|||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |
Sbjct 1327 CTGCTCTTCACGCAGCTATGGCCGTTTCTTATTTGGACGAACATGGTCATAGCCATGAAG 1386
Query 1321 ATGAGGTTAAGAGTGAATTATAGAATGTGTTGG-AGAAAATCAGCATTCTATTAGTCGTC 1379
| ||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| ||
Sbjct 1387 AAGAGGTTAAGAGTGAATTATAGAAGGTGTTGGGAGAAAATCAGC-TTATATTAGTCATC 1445
Query 1380 ATCCACTTGTATTTGAACTTGAAAGTTAGGTGAGGTTAGGTTTCGG 1425
||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 ATCTATTTGTATTTGAACTTGAAAGTTAGGTGAGGTTAGGTTTCGG 1491
> AT5G56650.1 | Symbols: ILL1 | IAA-leucine resistant (ILR)-like
1 | chr5:22930825-22932778 FORWARD LENGTH=1607
Length=1607
Score = 99.0 bits (53), Expect = 1e-19
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 410 TGGAAAGATGCATGCTTGTGGTCATGATACTCATGTTGCTATGCTTCTTGGTGCTGCTAA 469
|||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 390 TGGAAAAATGCATGCTTGTGGACATGATGGTCATGTTGCTATGCTTCTTGGTGCTGCTAA 449
Query 470 GCTTCTTCAA-AACA 483
| | |||||| ||||
Sbjct 450 GATACTTCAACAACA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5