BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477545
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcript... 2318 0.0
AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat sh... 662 0.0
> AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcription
factor A1E | chr3:673472-676403 FORWARD LENGTH=1864
Length=1864
Score = 2318 bits (1255), Expect = 0.0
Identities = 1390/1457 (95%), Gaps = 2/1457 (0%)
Strand=Plus/Plus
Query 128 CGACGGCGGTGATGAGCTCTATCCCGCCTTTTCTGAGCAAAACCTACGATATGGTTGACG 187
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 183 CGACGGCGGTGATGAGCTCCATTCCGCCTTTTCTGAGCAAAACGTACGATATGGTTGACG 242
Query 188 ATCCATTGACGGACGACGTGGTGTCTTGGAGCAGCGGCAACAACAGCTTCGTGGTTTGGA 247
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 243 ATCCATTGACGGACGACGTGGTGTCTTGGAGCAGCGGAAACAACAGCTTCGTGGTTTGGA 302
Query 248 ACGTGCCTGAGTTCGCGAAACAGTTTCTACCAAAGTATTTCAAGCACAACAATTTCTCCA 307
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACGTGCCTGAGTTCGCCAAACAGTTTCTACCAAAGTATTTCAAGCACAACAATTTCTCCA 362
Query 308 GTTTCGTCAGACAGCTCAATACTTATGGTTTCAGAAAAGTTGATCCAGACCGCTGGGAGT 367
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 363 GCTTCGTCAGACAGCTCAATACTTATGGTTTTAGAAAAGTTGATCCAGACCGCTGGGAGT 422
Query 368 TTGCAAATGAGGGCTTTTTAAGAGGCCAAAAACAAATACTAAAGAGTATTGTCCGGCGAA 427
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 TTGCAAACGAGGGCTTTTTAAGAGGCCAAAAGCAAATACTAAAGAGTATTGTCCGGCGAA 482
Query 428 AACCTTCGCAAGTGCAGCCTCCACAACAACCTCAAGTTCAGCACTCATCTGTGGGTGCGT 487
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AACCTGCACAAGTGCAGCCTCCACAACAACCTCAAGTTCAGCACTCATCTGTGGGTGCGT 542
Query 488 GCGTTGAAGTGGGCAAATTTGGACTCGAAGAAGAGGTGGAAAGACTTCAGAGGGATAAGA 547
||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||
Sbjct 543 GCGTTGAAGTGGGCAAATTTGGACTCGAAGAGGAAGTGGAAAGACTTCAGCGCGATAAGA 602
Query 548 ACGTCCTTATGCAGGAACTTGTAAGGTTAAGGCAGCAACAACAAGTTACCGAACATCATC 607
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 603 ACGTCCTTATGCAGGAACTTGTAAGGTTGAGGCAGCAACAACAAGTTACCGAACATCATC 662
Query 608 TGCAAAATGTGGGACAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCT 667
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 663 TGCAGAATGTGGGGCAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAGATGATGTCCT 722
Query 668 TTCTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTAAACCAATTTTCCCAGCAGAGTAATG 727
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 723 TTCTAGCAAAGGCTGTCCAAAGTCCAGGTTTCTTAAACCAATTTTCTCAGCAGAGTAATG 782
Query 728 ACGCAAACCAACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAGA 787
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AAGCAAACCAACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAGA 842
Query 788 TGAATTCTGGCAGTCATGGGGTCAGCGGTCTTAGCCGCCAGATTGTGAGATATCAGTCAT 847
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 843 TGAATTCTGGCAGTCATGGGGTTAATGGTCTTAGCCGCCAGATTGTGAGATATCAGTCAT 902
Query 848 CGATGAACGATGCAACAAACACTATGCTCCAACAGATACAACAGATGAGTAATTCACCTA 907
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 903 CGATGAACGATGCAACAAACACTATGCTTCAACAGATACAGCAGATGAGTAATGCACCTA 962
Query 908 GCCATGAATCTCTCTCAAGCAATCATGGCAGCTTTCTTTTGGGCGATGTTCCAAATTCCA 967
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 963 GCCATGAATCTCTCTCAAGCAATAATGGTAGCTTTCTTTTGGGCGATGTTCCAAATTCTA 1022
Query 968 ACCTTTCAGACAATGGGAGCTCCTCAAATGGATCATCTGGAGTTACATTGGCAGATGTTT 1027
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1023 ACATTTCAGACAATGGGAGCTCCTCAAATGGATCACCTGAAGTTACATTGGCAGATGTTT 1082
Query 1028 CATCCATTCCTGCAGGCTTATATCCTGCAATGAAGTATTACGACCCTTGTGAAACAAATC 1087
||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1083 CATCCATTCCTGCAGGCTTCTATCCTGCAATGAAGTACCACGAGCCTTGTGAAACAAATC 1142
Query 1088 AAGTCCTGGAGACCAATTTACCTTTTTCTCAAGGTGATCTCTTACCTCCAACGCAAGGAG 1147
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AAGTCATGGAGACCAATTTGCCTTTTTCTCAAGGTGATCTCTTACCTCCAACGCAAGGAG 1202
Query 1148 TAGCAGCTTCTGGGAGCTCGAGTTCGGATCTTGTTGGATGCGAGACAGATAATGGAGAAT 1207
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1203 CAGCAGCTTCTGGGAGCTCAAGTTCGGATCTTGTTGGATGCGAGACAGATAATGGAGAGT 1262
Query 1208 GTTTGGATCCAATAATGGCTGTTTTGGATGGTGCAATCGAACTAGAAGCTGATGCCTTAA 1267
||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1263 GTTTGGATCCAATAATGGCTGTTTTGGATGGCGCACTCGAACTAGAAGCTGATACCTTAA 1322
Query 1268 ATGAGTTGCTTCCTGAAGTCCAAGATTGTTTTTGGGAACAGTTCATTGGTGAGAGTCCAG 1327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1323 ATGAGTTGCTTCCTGAAGTCCAAGATTCTTTTTGGGAACAGTTCATTGGTGAGAGCCCAG 1382
Query 1328 TGATTGGTGAGACAGATGAGCTAATCTCAGGATCAGTGGAAAATGAACTGTTAATGGAGC 1387
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1383 TGATTGGTGAGACAGATGAGTTAATCTCAGGATCAGTGGAAAATGAACTGATATTGGAGC 1442
Query 1388 AGCTAGAATTACAATCAGGCCTGGGTAGTGTGTGGAGCAAGAACCAACAAATGAACCATC 1447
| ||||| ||||||||| |||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 1443 AACTAGAGTTACAATCAACCCTGAGTAATGTGTGGAGCAAGAATCAACAAATGAACCATC 1502
Query 1448 TTACTGAACAGATGGGACTTCTCACATCAGATACTCTCAGAAAATGAGATCGCCACGAAA 1507
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1503 TTACTGAACAGATGGGACTTCTCACATCAGATGCTCTCAGAAAATGAGATTGCCAC-AGG 1561
Query 1508 TCACAATCTTTCCTCATGAGATGGGTTAAGATTTTGTGGAGTCGCAACAACAAATAAGAA 1567
||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1562 CCACAATCTTTCCTCACGAGATGGGTTAAGATTTTGTGGAGCCGCAACAACAAA-AAGAA 1620
Query 1568 TATGACCAAAGGAGGTA 1584
|||||||||||||||||
Sbjct 1621 TATGACCAAAGGAGGTA 1637
Score = 82.4 bits (44), Expect = 1e-14
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 66 TTGTTGGAAGAAGACGGAACACCGGAATCAATTGCGATTTTGATTTATGGG 116
||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 98 TTGTT-GAAGAAGACGGTACACCGGAATCAATTGCGATTTTGATTTATGGG 147
> AT5G16820.1 | Symbols: HSF3, HSFA1B, ATHSFA1B, ATHSF3 | heat
shock factor 3 | chr5:5530273-5532792 FORWARD LENGTH=1833
Length=1833
Score = 662 bits (358), Expect = 0.0
Identities = 738/914 (81%), Gaps = 56/914 (6%)
Strand=Plus/Plus
Query 151 CCGCCTTTTC-TGAGCAAAACCTACGATATGGTTGACGATCCATTGACGGACGACGTGGT 209
||||| |||| |||| ||||||||||| |||||||| ||||| ||||| | || || ||
Sbjct 249 CCGCC-TTTCTTGAGTAAAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGT 307
Query 210 GTCTTGGAGCAGCGGCAACAACAGCTTCGTGGTTTGGAACGTG--CCTGAGTTCGCGAAA 267
|| ||||||||||| |||||||||||||| || ||| | ||| || |||||| || ||
Sbjct 308 TTCGTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGG-A-GTGCCCCGGAGTTCTCG-AA 364
Query 268 CAGT-TTC-TACCAAAGTATTTCAAGCACAACAATTTCTCCAGTTTCGTCAGACAGCTCA 325
|| || | || |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 365 -GGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAA 423
Query 326 ATACTTATGGTTTCAGAAAAGTTGATCCAGACCGCTGGGAGTTTGCAAATGAGGGCTTT- 384
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |||
Sbjct 424 ATACTTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTC 483
Query 385 TTAAGAGGCCAAAAACAAATACTAAAGAGTATTGTCCGGCGAAAACCTTCGCAAGTGCAG 444
|| ||||||| ||||||| |||| |||||||||||| || ||||||||||||| ||||||
Sbjct 484 TT-AGAGGCCGAAAACAACTACTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAG 542
Query 445 C---CTCCA-CAACAACCTCAAGTTCAGCA-CTCATCTGTGGGTGCGTGCGTTGAAGTGG 499
| | || |||||| ||||||||||| | ||||||||| ||||| || || || ||||
Sbjct 543 CAGAAT-CAGCAACAAACTCAAGTTCAG-AGCTCATCTGTTGGTGCTTGTGTCGAGGTGG 600
Query 500 GCAAATTTGGACTCGAAGAAGAGGTGGAAAGACTTCAGAGGGATAAGAACGTCCTTATGC 559
| || |||||| | |||||||| |||||||||||| || |||||||||| || |||||||
Sbjct 601 GGAAGTTTGGAATAGAAGAAGAAGTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGC 660
Query 560 AGGAACTTGTAAGGTTAAGGCAGCAACAACAAGTTACCGAACATCATCTGCAAAATGTGG 619
| ||||| || ||||||||||||||||| |||| ||| ||| | || ||||| |||||||
Sbjct 661 AAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGG 720
Query 620 GACAGAAAGTTCATGTGATGGAGCAGAGGCAGCAACAAATGATGTCCTTTCTAGCAAAGG 679
||||||||||||| ||||||||||| ||||| |||||||||||||| ||| |||||||||
Sbjct 721 GACAGAAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGG 780
Query 680 CTGTTCAAAGTCCAGGTTTCTTAAACCAATTT-TCC--CAGCAGAGTAATGACG-CAAAC 735
|||||||||||||||||||||||||||| || | | ||| | | |||||| | ||| |
Sbjct 781 CTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAA-C 839
Query 736 CA-ACACATTTCTGAAAGCAACAAAAAGAGGAGGCTACCTGTTGAGGACCAG-ATGAATT 793
| ||| ||| | | |||||||||||||||||| || ||||| || || ||| | ||||
Sbjct 840 -AGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGA-GAAT- 896
Query 794 C-TGGCAGTCA-TGGGG-TCAGCGGTCTTAGCCGCCAGATTGTGAGATATCAGTCATCGA 850
| ||| | || || || | | ||||||| |||||||||||| ||||||||| | ||||
Sbjct 897 CGTGGT-GACAATGTGGCTAAT-GGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGA 954
Query 851 TGAACGATGCA--ACAAACACTATGCTCCAACAGATAC--AACAGA-TGAGTAATTCACC 905
| ||||| ||| ||||| | |||||| | |||| | | || | | | |||| |||||
Sbjct 955 TAAACGAAGCAGCACAAA-A-TATGCTTCGACAGTT-CTTAA-ATACT-AGTACCTCACC 1009
Query 906 TAGCCATGAATCTCTCTCAAGCAATCATGGCAGCTTTCTT-TTGGGCGATGTTCCAAATT 964
| | ||||||| | |||| ||||| || ||| |||| | ||||| |||||||| | ||
Sbjct 1010 TCGGTATGAATCAGTTTCAAACAATCCTGACAG-TTTCCTATTGGGTGATGTTCCCAGTT 1068
Query 965 CCAACCT-T-TCAGACAATGGGAGCTCCT-CAAATGGA-TCATCTGGAGTTACATTGGCA 1020
| | ||| | | ||||||||||| | ||| ||| | || | |||||||| ||||||||
Sbjct 1069 CTA-CCTCTGT-AGACAATGGGAAC-CCTTCAAGTAGAGTT-TCTGGAGTAACATTGGCC 1124
Query 1021 GATGTTT-CATCCA 1033
|| |||| || |||
Sbjct 1125 GA-GTTTTCACCCA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5