BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477560 Length=1135 Score E Sequences producing significant alignments: (Bits) Value AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation fact... 1714 0.0 AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation fact... 710 0.0 > AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation factor B1C | chr3:717153-719315 FORWARD LENGTH=1172 Length=1172 Score = 1714 bits (928), Expect = 0.0 Identities = 1096/1170 (94%), Gaps = 40/1170 (3%) Strand=Plus/Plus Query 2 GAACCCATTGTACCGAAAACGCAACCTTTGCTTTCTCGGGAAACTCT-T-CAATTCCTGG 59 ||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| | Sbjct 5 GAATCCATTGTACCGAAAACGCAACCTTTGCTTTCTTGGGAAACTCTCTGCAATTCCT-G 63 Query 60 GAGAAATCG------ATCATCTTAGCTTCTGATTCTCTCTGT-TTTCTTCAGTTTCAATT 112 ||||||||| ||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct 64 GAGAAATCGACCATCATCATCTTAGCTT-TGATTCTCTCTGTGTTTCTTCACTTTCAATT 122 Query 113 TCTTATTTTGGTTTGTCGATAAGAGAAAGTAAAATACTTCTTGTGAGGGTTTAAGCtttt 172 || | ||||||||| |||||||||||||||||||| | || |||| |||||||||||||| Sbjct 123 TC-TGTTTTGGTTTATCGATAAGAGAAAGTAAAATTCGTC-TGTGGGGGTTTAAGCTTTT 180 Query 173 tttGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAG 232 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 TTGGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAG 240 Query 233 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAG 292 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 241 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAG 300 Query 293 CTCCACATAGGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 352 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 CTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 360 Query 353 CAGTACAAGAATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 412 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 420 Query 413 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 480 Query 473 CGAGAGAGGATTGGTAAAGCCAAACAAGAATTTCAGGATATCATAAGAGACCCATTCATG 532 |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 481 CGAGAGAGGATTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATG 540 Query 533 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 592 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 600 Query 593 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 660 Query 653 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 720 Query 713 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCTCTC-T-C 770 |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | | Sbjct 721 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCACCCCTAC 780 Query 771 CATTTGCAAAGaaaaaaaTCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CATTTGCAAAGAAAAAAATCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 840 Query 831 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTAGATCCATGGCCACACTCTTCT 890 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 841 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTACATCCATGGCCACACCCTTCT 900 Query 891 TCTTGGCC---G----G-TAATATCACAAAA-T---GAAAATCTCTCAAAACTTTTGTAA 938 || ||||| | | ||||||||||||| | ||||||||||||| |||||||||| Sbjct 901 TCGTGGCCACTGATATGGTAATATCACAAAACTAATGAAAATCTCTCAAGACTTTTGTAA 960 Query 939 TGGAATTGtttttctttttcttttGTCTTCACATGGCTTTGCTTCTGAAAGCTAATGTTA 998 ||||| ||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||| Sbjct 961 TGGAAGTGTTTTTGTTTTTCTTTCGTCTTCACATGGCTCTGCTTCTTAAAGCTAATGTTA 1020 Query 999 GTATCAACTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTCACTGTAAATTCTGATG 1058 ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1021 GTATCAATTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTTATTGTAAATTCTGATG 1080 Query 1059 GATA-AA--TGTATAAATCTG-CAAAA-TT-C----T-C--ATGAGATTGTTAAAGTGTC 1105 |||| || |||||||||||| ||||| || | | | |||||||| ||||||| || Sbjct 1081 GATACAAAATGTATAAATCTGACAAAAATTGCAAAATTCTCATGAGATTATTAAAGTCTC 1140 Query 1106 CCTTATAGCTATAATAGATGATTGATCTTT 1135 |||||||||||| ||||||||||||||||| Sbjct 1141 CCTTATAGCTATGATAGATGATTGATCTTT 1170 > AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor B1B | chr5:5610806-5613065 FORWARD LENGTH=1150 Length=1150 Score = 710 bits (384), Expect = 0.0 Identities = 569/656 (87%), Gaps = 22/656 (3%) Strand=Plus/Plus Query 128 TCGATAAGAGAAAGTAAAA-TACTTCTTGTG-AGGGTTTAAGCtttttttGGG--T--GA 181 ||||||||| ||| |||| || || || || || |||| |||||||||| | || Sbjct 193 TCGATAAGATAAAACAAAACTAATT-TT-TGAAGAGTTT---TTTTTTTTGGGTTTGGGA 247 Query 182 GAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAGGAGATGAGG 241 | |||||||||| ||||||| ||||| |||||||||||||||||||| || || |||||| Sbjct 248 GCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGCAATCAAGAAATGAGG 307 Query 242 GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAGCTCCACATA 301 |||||||||||||| |||||||| ||||| |||||||| || || |||||||| || || Sbjct 308 GTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATTCTCTACAAGCTTCATATT 367 Query 302 GGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTTCAGTACAAG 361 ||||||||| |||| ||||||||||| || || ||||||||||||||||||||||||||| Sbjct 368 GGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTTGAGAAAGTTCAGTACAAG 427 Query 362 AATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAG 420 ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| ||||| Sbjct 428 AATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAG 486 Query 421 GCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAG 480 |||||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| Sbjct 487 GCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGATTCCTTAGATCGAGAGAG 546 Query 481 GATTGGTAAAGCCAAA-CAAGAATTTCAGGATATCATAAGAGACCCATTCATGCTCAACA 539 ||| || ||||| ||| |||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 547 GATCGGGAAAGC-AAAGCAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACA 605 Query 540 GTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAG 599 || ||||||| ||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 606 GTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAG 665 Query 600 TATGTGAAGGGCTT-GGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACA 658 ||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| || Sbjct 666 TATGTGAAGGG-TTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACT 724 Query 659 TGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAA 718 |||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| || || Sbjct 725 TGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAG 784 Query 719 GAGGTTAAAGCCGCTGG-TTACTCATCAGTTGGTCC-CTCGTTTTAGCTCTCTCCA 772 || |||||||||||||| || | |||| ||||| || ||||||||| ||| |||| Sbjct 785 GATGTTAAAGCCGCTGGATT-CACATCGGTTGG-CCACTCGTTTTAAATCT-TCCA 837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55672404405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5