BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477560

Length=1135
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation fact...  1714    0.0  
  AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation fact...   710    0.0  


> AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation factor 
B1C | chr3:717153-719315 FORWARD LENGTH=1172
Length=1172

 Score = 1714 bits (928),  Expect = 0.0
 Identities = 1096/1170 (94%), Gaps = 40/1170 (3%)
 Strand=Plus/Plus

Query  2     GAACCCATTGTACCGAAAACGCAACCTTTGCTTTCTCGGGAAACTCT-T-CAATTCCTGG  59
             ||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct  5     GAATCCATTGTACCGAAAACGCAACCTTTGCTTTCTTGGGAAACTCTCTGCAATTCCT-G  63

Query  60    GAGAAATCG------ATCATCTTAGCTTCTGATTCTCTCTGT-TTTCTTCAGTTTCAATT  112
             |||||||||      ||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct  64    GAGAAATCGACCATCATCATCTTAGCTT-TGATTCTCTCTGTGTTTCTTCACTTTCAATT  122

Query  113   TCTTATTTTGGTTTGTCGATAAGAGAAAGTAAAATACTTCTTGTGAGGGTTTAAGCtttt  172
             || | ||||||||| |||||||||||||||||||| | || |||| ||||||||||||||
Sbjct  123   TC-TGTTTTGGTTTATCGATAAGAGAAAGTAAAATTCGTC-TGTGGGGGTTTAAGCTTTT  180

Query  173   tttGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAG  232
             || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181   TTGGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAG  240

Query  233   GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAG  292
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  241   GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAG  300

Query  293   CTCCACATAGGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT  352
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  301   CTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT  360

Query  353   CAGTACAAGAATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC  412
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  361   CAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC  420

Query  413   TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC  472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421   TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC  480

Query  473   CGAGAGAGGATTGGTAAAGCCAAACAAGAATTTCAGGATATCATAAGAGACCCATTCATG  532
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  481   CGAGAGAGGATTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATG  540

Query  533   CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT  592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541   CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT  600

Query  593   CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA  652
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601   CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA  660

Query  653   GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA  712
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661   GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA  720

Query  713   CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCTCTC-T-C  770
             |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct  721   CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCACCCCTAC  780

Query  771   CATTTGCAAAGaaaaaaaTCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG  830
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781   CATTTGCAAAGAAAAAAATCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG  840

Query  831   CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTAGATCCATGGCCACACTCTTCT  890
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  841   CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTACATCCATGGCCACACCCTTCT  900

Query  891   TCTTGGCC---G----G-TAATATCACAAAA-T---GAAAATCTCTCAAAACTTTTGTAA  938
             || |||||   |    | ||||||||||||| |   ||||||||||||| ||||||||||
Sbjct  901   TCGTGGCCACTGATATGGTAATATCACAAAACTAATGAAAATCTCTCAAGACTTTTGTAA  960

Query  939   TGGAATTGtttttctttttcttttGTCTTCACATGGCTTTGCTTCTGAAAGCTAATGTTA  998
             ||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct  961   TGGAAGTGTTTTTGTTTTTCTTTCGTCTTCACATGGCTCTGCTTCTTAAAGCTAATGTTA  1020

Query  999   GTATCAACTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTCACTGTAAATTCTGATG  1058
             ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  1021  GTATCAATTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTTATTGTAAATTCTGATG  1080

Query  1059  GATA-AA--TGTATAAATCTG-CAAAA-TT-C----T-C--ATGAGATTGTTAAAGTGTC  1105
             |||| ||  |||||||||||| ||||| || |    | |  |||||||| ||||||| ||
Sbjct  1081  GATACAAAATGTATAAATCTGACAAAAATTGCAAAATTCTCATGAGATTATTAAAGTCTC  1140

Query  1106  CCTTATAGCTATAATAGATGATTGATCTTT  1135
             |||||||||||| |||||||||||||||||
Sbjct  1141  CCTTATAGCTATGATAGATGATTGATCTTT  1170


> AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor 
B1B | chr5:5610806-5613065 FORWARD LENGTH=1150
Length=1150

 Score =  710 bits (384),  Expect = 0.0
 Identities = 569/656 (87%), Gaps = 22/656 (3%)
 Strand=Plus/Plus

Query  128  TCGATAAGAGAAAGTAAAA-TACTTCTTGTG-AGGGTTTAAGCtttttttGGG--T--GA  181
            ||||||||| |||  |||| || || || || || ||||    ||||||||||  |  ||
Sbjct  193  TCGATAAGATAAAACAAAACTAATT-TT-TGAAGAGTTT---TTTTTTTTGGGTTTGGGA  247

Query  182  GAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAGGAGATGAGG  241
            | |||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||
Sbjct  248  GCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGCAATCAAGAAATGAGG  307

Query  242  GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAGCTCCACATA  301
            |||||||||||||| |||||||| ||||| |||||||| || || |||||||| || || 
Sbjct  308  GTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATTCTCTACAAGCTTCATATT  367

Query  302  GGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTTCAGTACAAG  361
            ||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||||
Sbjct  368  GGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTTGAGAAAGTTCAGTACAAG  427

Query  362  AATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAG  420
            ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||
Sbjct  428  AATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAG  486

Query  421  GCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAG  480
            |||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||
Sbjct  487  GCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGATTCCTTAGATCGAGAGAG  546

Query  481  GATTGGTAAAGCCAAA-CAAGAATTTCAGGATATCATAAGAGACCCATTCATGCTCAACA  539
            ||| || ||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct  547  GATCGGGAAAGC-AAAGCAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACA  605

Query  540  GTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAG  599
            || ||||||| ||||||||||||||||| |||||||||||||||||||| ||  ||||||
Sbjct  606  GTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAG  665

Query  600  TATGTGAAGGGCTT-GGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACA  658
            ||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| || 
Sbjct  666  TATGTGAAGGG-TTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACT  724

Query  659  TGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAA  718
            ||||||||||  ||||| ||||| ||||||||||| |||||||||||  |||| || || 
Sbjct  725  TGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAG  784

Query  719  GAGGTTAAAGCCGCTGG-TTACTCATCAGTTGGTCC-CTCGTTTTAGCTCTCTCCA  772
            || |||||||||||||| || | |||| ||||| || |||||||||  ||| ||||
Sbjct  785  GATGTTAAAGCCGCTGGATT-CACATCGGTTGG-CCACTCGTTTTAAATCT-TCCA  837



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55672404405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5