BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477590
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03440.1 | Symbols: | ARM repeat superfamily protein | chr3... 2348 0.0
> AT3G03440.1 | Symbols: | ARM repeat superfamily protein | chr3:815644-818834
FORWARD LENGTH=1558
Length=1558
Score = 2348 bits (1271), Expect = 0.0
Identities = 1458/1547 (94%), Gaps = 18/1547 (1%)
Strand=Plus/Plus
Query 1 tctctctctctttctctttctc-agcagatcttttcttctttctcCTGAAATGGACCTCG 59
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 16 TCTCTTTCTCTTTCTCTTTCTCAAGCAGATCTTTTCTTCTTTCTCCTGAAATGGACCTCG 75
Query 60 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGcttctttttcttcttcttcttcCTCCG 119
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 76 CCGGAGAAACAAACAGCCTTATCTCCACCGTCGCTTCTTCTTCTTCCTGTTCTTCCTCCG 135
Query 120 TTTCATCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 179
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGTCGTCAATCGACACAAGCCTCGATTGCGATTCGCCACGTGGCGGAGATGTAGACCACG 195
Query 180 AATTGCTCCACTCGGCGGTTTCTCCGTCGGT-GTCGGTTTCGGTTTCTTCGTCTTCTTCT 238
||||||||||| |||||||||| || | |||||| |||||||||||||||||||||
Sbjct 196 AATTGCTCCACACGGCGGTTTCGGTTTC-TTCGTCGGTGTCGGTTTCTTCGTCTTCTTCT 254
Query 239 GCTTCAATCCAGAGAGTACTGAGTTTAATCAGATCAGAGGATCT-CGATTCGAGGTTGTT 297
||||||||||||||||| ||||| |||||| |||| |||||| | |||||||||| ||||
Sbjct 255 GCTTCAATCCAGAGAGTTCTGAGCTTAATCCGATCGGAGGAT-TGCGATTCGAGGCTGTT 313
Query 298 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TGCTGCTAAAGAGATCCGTCGGCTGACAAAGACGTCTCATAGGTGCCGCCGACACTTTTC 373
Query 358 CCAAGCCGTGGAACCGCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCATGA 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 CCAAGCCGTGGAACCTCTCGTTTCTATGCTCCGATTTGATTCGCCTGAATCTCACCACGA 433
Query 418 AGCTGCTTTACTTGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 477
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGCTGCTTTACTCGCTCTCCTTAACCTCGCCGTCAAAGACGAAAAGAATAAAGTGAGTAT 493
Query 478 AATTGAAGCTGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 537
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AATTGAAGCCGGTGCTTTAGAGCCAATCATCAACTTCTTACAATCAAATAGCCCAACACT 553
Query 538 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCAAGAGTATGCTTCTGCATCTTTGCTCACTCTCTCCGCGTCAGCAAACAACAAACCCAT 613
Query 598 CATTGGAGCTAATGGCGTGATTCCTTTATTAGTCAAAGTCATTAAACATGGAAGCCCACA 657
||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 614 CATTGGAGCTAATGGTGTGGTTCCTTTATTAGTCAAGGTCATTAAACATGGAAGCCCACA 673
Query 658 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTTAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 674 AGCTAAAGCTGATGCAGTAATGGCTCTTTCCAACCTCTCTACACTCCCCGATAACCTAAG 733
Query 718 CATGATCCTAGCGACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CATGATCCTAGCAACTAAACCACTCTCACCAATACTGAATCTTCTCAAATCAAGTAAAAA 793
Query 778 GTCATCGAAAACATCTGAGAAATGTTGTTCTCTGATAGAATCCTTGATAGTTTCTGGTGA 837
||| |||||||||||||||||||||||||| || ||||| ||||||| |||||||||||
Sbjct 794 GTCGTCGAAAACATCTGAGAAATGTTGTTCACTAATAGAGGCCTTGATGGTTTCTGGTGA 853
Query 838 GGATGCGAGAACAGGGTTAGTTTCAGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 897
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 854 GGAGGCGAGAACAGGGTTAGTTTCTGATGAAGGAGGAGTTTTAGCGGTCGTGGAAGTTCT 913
Query 898 TGAAAACGGGTCATTGCAAGCTCGGGAACATGCGGTTGGCGTACTTTTAACGCTCTGCCA 957
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 914 TGAAAACGGGTCATTACAAGCTCGGGAACATGCCGTTGGCGTGCTTTTAACGCTCTGCCA 973
Query 958 AAGTGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTGATACCAGGACTGCT 1017
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 974 AAGCGATAGGAGTAAATACAGAGAGCCAATTCTTAGAGAAGGTGTAATACCGGGACTGCT 1033
Query 1018 TGAGCTCACGGTTCAAGGGACATCAAAATCTCGGACTAAAGCTCAGAGACTTCTCTGTTT 1077
||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct 1034 TGAGCTCACGGTTCAGGGGACATCGAAATCTCGGATTAAAGCTCAAAGACTTCTCTGTTT 1093
Query 1078 ACTAAGGGACTCAGAAAGCCCGAGATCAGAGGTTCAACCCGATACAATAGAAAACATAGT 1137
||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1094 ACTAAGGAACTCGGAAAGTCCGAGATCAGAGGTCCAACCCGATACAATAGAAAACATAGT 1153
Query 1138 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GTCAAGCTTAATCTCTCATATAGACGGAGATGATCAATCCGGTAAGGCAAAGAAGATGCT 1213
Query 1198 AGCTGAAATGGTGCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCTTC 1257
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1214 AGCTGAAATGGTCCAAGTTAGCATGGAAAAAAGCTTGAGACATCTACAAGAACGTGCCTC 1273
Query 1258 GACTCTTGTCCGTCCATAACATGTGATCGAAAAACCGCAATCCCGAGGACTCTTCCAAGC 1317
||||||||| |||||||||| |||||||||||| |||||||||| ||| |||||||||
Sbjct 1274 GACTCTTGTTCGTCCATAACCTGTGATCGAAAA-CCGCAATCCCTAGGTTTCTTCCAAGT 1332
Query 1318 ATAAAC-CG-TGGTATGTCTCCGAATAAGGGTGATTAAGATTGATGAATATATATATGCC 1375
||||| || |||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1333 ATAAAAACGGTGGTTTGACTCCGAATAAGGGTGATGAAGATTGAAGAATATATATATGCC 1392
Query 1376 AGTCCAGTTGCCGGCGTTTTGGTTCTTAGTGACTGGttttttttttCTT-ACTCAGAAGT 1434
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1393 AGTCCAGTTGCCGGCGCTTTGGTTCTTAGTGACTGGTTTTTTTTTTTTTTACTCAAAAGT 1452
Query 1435 GTTCATAATAAAAGCAATTTGTAATTTAA-GTCTTTTTGTGTGTACAT---T-ACTTATA 1489
||||||||||||| || |||||||||||| |||||||||||||||||| | |||||||
Sbjct 1453 GTTCATAATAAAATCATTTTGTAATTTAAAGTCTTTTTGTGTGTACATGCATTACTTATA 1512
Query 1490 GAATCGCTTTTACATTTTACAA--G-TTTCAATGATATTGTTGTGCC 1533
||||||||||||| ||| | || | ||||||||||||| |||||||
Sbjct 1513 GAATCGCTTTTAC-TTTAAAAAAAGGTTTCAATGATATTATTGTGCC 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5