BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477591 Length=1934 Score E Sequences producing significant alignments: (Bits) Value AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819337-821406 R... 2748 0.0 > AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819337-821406 REVERSE LENGTH=2070 Length=2070 Score = 2748 bits (1488), Expect = 0.0 Identities = 1765/1891 (93%), Gaps = 49/1891 (3%) Strand=Plus/Plus Query 75 CCACCACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGCT 134 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 170 CCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGAT 229 Query 135 GATG---ACAAC-A-A-CAACATGGATGATGAGCTTCTTGCTGTTCTTGGATACAAGGTT 188 |||| ||||| | | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 230 GATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTT 289 Query 189 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAGCAACTTGAGATGGTCTTGTCT 248 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 290 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAACAACTTGAGATGGTCTTGTCT 349 Query 249 AATGATGATGTTGGTTCTACTGTCTTAAACGACACTGTTCATTATAACCCATCTGATCTC 308 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 350 AATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTC 409 Query 309 TCTACCTGGGTCGAGAGCATGCTCTCGGAGCTTAACAACCCAACTTCTTCGGATCTTGAC 368 |||| |||||||||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct 410 TCTAACTGGGTCGAGAGCATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGAC 469 Query 369 CCGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTGC-GAGCAATTCCGGGTCTTTC 427 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 470 ACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCT-CAGAGCAATTCCGGGTCTTTC 528 Query 428 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAAAGGATCCGACT 487 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 529 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACT 588 Query 488 CGGATCCTGGTGCGAACCGGCTGG-TGAGTCAACTCGGTCCGTGGTGGTCGTTGACTCTC 546 |||||| ||||||||| || | || ||||||||||||||||||||| |||||||||||| Sbjct 589 CGGATCGTGGTGCGAATCGTC-GGACGAGTCAACTCGGTCCGTGGTGCTCGTTGACTCTC 647 Query 547 AGGAGACCGGAGTTAGACTCGTCCACGCGCTGGTGGCGTGCGCTGAGGCGATTCAGCAGG 606 ||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||| Sbjct 648 AGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGG 707 Query 607 AGAATCTCAACTTAGCTGACGCGCTCGTGAAACGCGTGGGAACACTCGCGGCTTCTCAAG 666 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 708 AGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCGTGGGAACACTCGCGGGTTCTCAAG 767 Query 667 CTGGAGCTATGGGAAAAGTCGCTACGTATTTCGCTCAAGCTTTGGCTCGTCGTATTTACC 726 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 768 CTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC 827 Query 727 GTGATTACACGGCGGAGACGGACGTCT-C-AGGC-G-G----C-TCCTTGGAAGAGGTTT 777 ||||||||||||||||||||||||| | | ||| | | | || || |||||||||| Sbjct 828 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTT 887 Query 778 TGCAGATGCACTTCTACGATTCTTGCCCTTACCTAAAATTCGCTCATTTCACGGCGAATC 837 || |||||||||| ||||| |||||||||||||| || |||||||||||||||||||| | Sbjct 888 TGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTTCGCTCATTTCACGGCGAACC 947 Query 838 AAGCGATTCTAGAAGCTGTCGCGACGGCGCGTAGAGTTCACGTCATCGATTTAGGGCTTA 897 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 948 AAGCGATTCTAGAAGCTGTTACGACGGCGCGTAGAGTTCACGTCATTGATTTAGGGCTTA 1007 Query 898 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGTCCTC 957 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1008 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTC 1067 Query 958 CGTCGTTTCGTCTCACCGGAATCGGACCTCCGCAGAAGGAGAATTCAGATTCGCTTCAAC 1017 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1068 CGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC 1127 Query 1018 AATTAGGTTGGAAATTAGCTCAATTCGCTCAAAACATGGGCGTTGAATTCGAATTCAAAG 1077 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1128 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAATTCAAAG 1187 Query 1078 GTTTAGCCGCTGAGAGTTTATCGGATCTAGAACCCGAAATGTTCGAAACCCGACCTGATT 1137 | |||||||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 1188 GCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAATGTTCGAAACCCGACCCGAAT 1247 Query 1138 CCGAAACCTTAGTGGTTAATTCGGTTTTTGAGCTTCACCGGTTATTAGCCCGATCCGGTT 1197 | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1248 CTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTT 1307 Query 1198 CAATAGAAAAGCTTCTCAACACGGTTAAAGCTGTTAAACCGAGTATTATAACGGTGGTTG 1257 |||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||| Sbjct 1308 CAATCGAAAAGCTTCTCAATACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTG 1367 Query 1258 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1368 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1427 Query 1318 ACTACTCGAGCCTGTTTGACTCGCTCGAAGACAGTGGTAGCTTACCGAGTCAAGACCGAG 1377 ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1428 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAG 1487 Query 1378 TTATGTCAGAAGTGTACTTAGGGAGACAAATACTTAACGTTGTTGCGGCGGAAGGATCCG 1437 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 1488 TTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGGTCCG 1547 Query 1438 ATCGGGTCGAGCGACACGAGACGG-TGGCACAGTGGAGGATCCGGATGAAATCCGCTGGG 1496 ||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||| Sbjct 1548 ATCGGGTCGAGCGGCACGAGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGG 1606 Query 1497 TTTGACCCGGTTCATCTCGGATCTAGCGCGTTCAAACAAGCGAGCATGCTTTTATCACTT 1556 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1607 TTTGACCCGATTCATCTCGGATCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT 1666 Query 1557 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGTTGTTTAATGATTGGGTGG 1616 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1667 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGG 1726 Query 1617 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCCGGAGGTGGCGAGTCGCGG 1676 |||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1727 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC-----TG---AGTCGCGG 1778 Query 1677 CGGTAGAGATGACTTGCATGAAACCGGGAAAAT-AATAAATGTTTTAAAAAATTAGGAAA 1735 |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| Sbjct 1779 CGGTAGAGATGACTCGCCTGAAACCGGGAAAAACAATAAATGTTTTAAAAAATTAGGAAA 1838 Query 1736 GGAGACCGTAACtttagt-atgtttttactttttaacccgaagtttttgtgtgtttaacc 1794 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1839 AGAGACCGTAACTTTAGTTATGTTTTTACTTTTTAACCCGAAGTTTTTGTGTGTTTAACC 1898 Query 1795 gttttgcctaaatgtttacaactttaTCTTTTTGGACCTTGTGCGTATCTTTGAGA---A 1851 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1899 TTTTTGCCTAAATGTTTACAACTTTATCTTTTTGGACCTTGTGCGTATCTTTGAGAGTTA 1958 Query 1852 ------CGAGTAAAA--TCTTGTATCGTAGATCGAGCTGAGTAAGTTTTCAATAAATGTG 1903 ||||||||| ||||||||||||||||||||| |||| |||||||||||||| | Sbjct 1959 AGAGAACGAGTAAAAAATCTTGTATCGTAGATCGAGCTAAGTA-GTTTTCAATAAATG-G 2016 Query 1904 GAAGGATAATAAACGATTCTGTATGTTTTTT 1934 |||||||| |||||||||||||||||| Sbjct 2017 -AAGGATAA----CGATTCTGTATGTTTTTT 2042 Score = 84.2 bits (45), Expect = 4e-15 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 45 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 60 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95782639860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5