BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477602 Length=2273 Score E Sequences producing significant alignments: (Bits) Value AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/... 3373 0.0 > AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr3:856876-860469 FORWARD LENGTH=2325 Length=2325 Score = 3373 bits (1826), Expect = 0.0 Identities = 2069/2183 (95%), Gaps = 30/2183 (1%) Strand=Plus/Plus Query 1 GTTGGTAAACCGCT-CGGTAC-A-A----TAGTCATCCAAAA-GTCGGATTCGCCGATCT 52 |||||||||||| | |||||| | | ||||||||||||| ||| ||||||||||||| Sbjct 1 GTTGGTAAACCG-TCCGGTACAAGATTTTTAGTCATCCAAAAGGTC-GATTCGCCGATCT 58 Query 53 ---AGACGACGACGACG---ACCAAACACTCCGATCAACGGTCCTCCGATTCCCTCTCGC 106 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 59 AGAAGACGACGACGACGACTACCAAACACTCCGATCAACGGTCCTCCGATTCTCTCTCGC 118 Query 107 TTTCGTCTTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTGAG 163 |||||| ||||| | |||||||||||||||||||||| |||||||||||||||||| Sbjct 119 TTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTGAG 178 Query 164 TGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 223 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 238 Query 224 GCCCTTCTATGAACGCACCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATACAC 283 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 239 GCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATACAC 298 Query 284 ACAGTTATGGAAGTTTCAGCAAGAAAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 343 ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 299 ACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 358 Query 344 ATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATGCG 403 ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 359 ATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATGCG 418 Query 404 GACAAGTGATGCCGGTTACTTATCTGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 463 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 419 AACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 478 Query 464 GGAGTACTTCAAAGAAGGATTGTTTCAGGATCTCAATATTGCAAACAAACAGCTACGGTT 523 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 479 GGAGTACTTCAAAGATGGATTGTTTCAGGATCTCAATATTGCAAACAAGCAGCTTCGGTT 538 Query 524 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTTGGCCGCCGTGAGATGGTGCATCAACT 583 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 539 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTTGGCCGCCGTGAGATGGTGCATCAACT 598 Query 584 TGTTGATCAGTTTAAACGGTTGATAGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 643 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 599 CGTTGATCAGTTTAAACGGTTGATTGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 658 Query 644 TAAAGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCTGACACTGCATT 703 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 659 TAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCGGACACTGCATT 718 Query 704 TATGAATATCAGACCTCTAAGATACAGTCTTGTACTGGATCCTAATTTGGATGCTGGTAC 763 ||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 719 CATGAACATTAGACCTCTAAGATACAGTCTTGTATTGGATCCTAATCTGGATGCTGGTAC 778 Query 764 ACCGCGTGCAAGTAGATCTTTAAGGTTGACGGATGCAATCTTGAGCAGCTACTATTATAA 823 |||||||||||||| |||||||||||||||||||| ||||||||||| || || | ||| Sbjct 779 TCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGATGCTATCTTGAGCAGTTATTACTGTAA 838 Query 824 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 898 Query 884 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCAAAAATGGGTCTGAATGCTCCCGT 943 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 899 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCTAAAATGGGTCAGAATGCTCCCGT 958 Query 944 TGGAGTTTCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1003 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TGGAGTTGCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1018 Query 1004 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACTATTTG 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1019 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACCATTTG 1078 Query 1064 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGAATGG 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGATTGG 1138 Query 1124 ACAGATTTCATCATCTCCTTTGAGTGCTAGAAGTGCAACCAATGTTGAGGAGAATATCTT 1183 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1139 ACAGATTTCATCATCTCCCTTGAGTGCTAGAAGTGCAACCAGTGTTGAGGAGAATATCTT 1198 Query 1184 GAGAGACTTTGAATCTCACACAATCAAACAAGAGAGAGACCCATCACTTCAAATTACCCC 1243 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 1199 GAGAGACTTTGAATCTCACACAATCAAACAAGAGACAGAACCATCACTTCAAATTACGCC 1258 Query 1244 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTCTGTC 1303 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1259 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTTTGTC 1318 Query 1304 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATCTACCCCTCTGATTTAGTTCCATT 1363 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1319 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATATATCCCTCTGATTTAGTTCCATT 1378 Query 1364 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAGAATAT 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1379 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAAAATAT 1438 Query 1424 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCATTGCTTCTGTCTCCATCACATACTCCTCC 1483 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1439 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCGTTACTTCTGTCTCCATCACATACTCCTCC 1498 Query 1484 GCTTATTTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1543 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 GCTTATCTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1558 Query 1544 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGGGATTTCCGCCTCTGATATGGAAACGGA 1603 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1559 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGAGATTTCCGCCTCTGATATGGAAACGGA 1618 Query 1604 TATCTTAACTAAGGCCGAGAAGCTTCTTTCCTCGTTTATGAACGAATGGGCTTCGACATT 1663 ||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1619 TATTTTTACTAAGGCCGAGAAGCTTCTTTCCTCGTCTATGAACGAATGGGCTTCGACATT 1678 Query 1664 GGCAACATCAGATACCCTTCACCCAGTTTGGTCACAAATACTAAAAGATCCATTCTTGAG 1723 |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1679 GGCAACATCAGATACCCTTCACCCTGTTTGGTCACAGATACTAAAAGATCCCTTCTTGAG 1738 Query 1724 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1739 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1798 Query 1784 CAATAACAAACAAAATCAGCCAGAGTGCTTTCCGTCTCTCCCAGAATCGCTAGTACCAAC 1843 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 1799 CAATAACAAACAAAATCAGCCAGAGTGCTGTCCGTCTCTCCCAGAATCGCTATTACCAAC 1858 Query 1844 TGCTCCTGCCGTTCAATCCGCTGTGCTTCTGATGGCCAATGTATTTGGGGCTACAAGTAA 1903 ||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||| Sbjct 1859 TGCTCCTGCTGTTCAATCCGCTGTGTTTCAGATGGCCAATGTATTTGGTGCTACAAGTAA 1918 Query 1904 ATTTACTCTACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGATGCT-ACCTCTGCGA 1962 ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1919 ATTTACTATACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGAAGCTTACCTCTGCGA 1978 Query 1963 CGATAAGAGCTTCGGTCTGAAAATATTCTT-TTGCAAATTGGGAATCTCGATTTGGTTTC 2021 |||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||| Sbjct 1979 CGATAAGAGCTTCGGTCTGAAA-TATTCTTGTT-CAAATCGGGAATCTCGATTTGGTTTC 2036 Query 2022 CCCTTAGGGTAAACTATGGTTTTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2081 || || |||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 2037 CCGGTAAGGTATACTAT--TATTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2094 Query 2082 TATGACCAAACATCTTTTGAGATTTATGGTTCAAGAACATTTTGGTGTGC-CAAATTAAC 2140 |||||| |||||||||||||||| ||||| ||||| |||||||||||| |||| ||| Sbjct 2095 TATGACTGAACATCTTTTGAGATTAATGGTGCAAGATCATTTTGGTGTGAACAAAGTAA- 2153 Query 2141 AAAGTGTTTGATGCAGAACATGT 2163 |||||||||||||||||||| Sbjct 2154 ---GTGTTTGATGCAGAACATGT 2173 Score = 119 bits (64), Expect = 1e-25 Identities = 97/111 (87%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 2163 TTGTATATTGATTCAACTTTTACAGTCTAATGGAAATTCAACATCTACTGTAATTCGGTC 2222 ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 2222 TTGTATATTGA-TCAACTTTTACAGTCTAATGGAAATTCACCATCTTCTGTAATTCGATC 2280 Query 2223 AAGAGAATAAGAGGTTCACCATCTGAACACTGTTGATTGCGTTGTCGGTAT 2273 ||| |||||||||||||||| ||| | | ||||||||||||||||| Sbjct 2281 GAGAAAATAAGAGGTTCACCA-CTG-----T-T-GATTGCGTTGTCGGTAT 2323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112800624615 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5