BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477651
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03960.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 3073 0.0
> AT3G03960.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr3:1024258-1027891 FORWARD LENGTH=2111
Length=2111
Score = 3073 bits (1664), Expect = 0.0
Identities = 1836/1919 (96%), Gaps = 12/1919 (1%)
Strand=Plus/Plus
Query 1 TTCTCTCTAAACACCTTCGAAAATCTCACAGAG---CTTCTTCTTCGCTTTTAGGGTTTC 57
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 59 TTCTCTCTAAACTTCTTCGAAAATCTCACAGAGCTTCTTCTTCTTCGCTTTTAGGGTTTT 118
Query 58 TGCAC--TT-TTTCGGAGTGACCCAACTTCAAAGCTTATAGATCGTTACCTGAGAAAATG 114
||| | || |||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 119 TGCTCTATTGTTTC-GAGTGACCCAACTTCGAAGCTTATAGATCGTTACCTTAGAAAATG 177
Query 115 GTGGGTATGTCGATGCAGCCGTATGGTATCCAATCGATGCTTAAAGAAGGTTACAGGCAT 174
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 178 GTGGGTATGTCGATGCAGCCATATGGTATTCAATCGATGCTTAAAGAAGGTTACAGGCAT 237
Query 175 CTCTCTGGTCTCGACGAAGCCGTCATTAAGAACATTGAAGCTTGCAAGGAGCTCTCCACC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCTCTGGTCTCGACGAAGCCGTCATTAAGAACATTGAAGCTTGCAAGGAGCTCTCCACC 297
Query 235 ATTACTCGCACCTCTCTCGGTCCCAATGGAATGAATAAAATGGTTATCAATCATTTGGAC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATTACTCGCACCTCTCTCGGTCCCAATGGAATGAATAAAATGGTTATCAATCATTTGGAC 357
Query 295 AAACTATTTGTCACGAATGACGCTGCTACTATTGTGAATGAACTCGAGATTCAGCACCCG 354
||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 358 AAACTGTTTGTCACAAATGACGCTGCTACTATAGTGAATGAGCTCGAGATTCAGCACCCG 417
Query 355 GCTGCTAAACTTCTGGTTTTAGCTGCTAAGGCTCAGCAAGAAGAAATCGGAGATGGAGCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCTGCTAAACTTCTGGTTTTAGCTGCTAAGGCTCAGCAAGAAGAAATCGGAGATGGAGCT 477
Query 415 AATCTGACTATCTCTTTTGCTGGTGAGCTTCTTCAAAACGCTGAGGAGCTTATCAGGATG 474
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 AATCTGACAATCTCCTTTGCTGGTGAACTTCTTCAAAACGCTGAGGAGCTTATCAGGATG 537
Query 475 GGGCTTCATCCGAGTGAGATCATTAGTGGATATACTAAAGCTGTCAACAAGGCTGTTGAA 534
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GGACTTCATCCGAGTGAGATCATTAGTGGATATACTAAAGCTGTCAGCAAGGCTGTTGAA 597
Query 535 ATACTGGAACAACTGGTTGAGAGTGGTTCTGAGACCATGGATGTTCGTAACAAGGATGAA 594
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 598 ATACTGGAACAACTGGTTGAGACTGGTTCTGAGACCATGGATGTACGTAACAAGGATGAA 657
Query 595 GTTATTTCTCGGATGAGAGCAGCTGTTGCAAGCAAGCAGTTTGGGCAAGAGGAAATAATA 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTATTTCTCGGATGAGAGCAGCTGTTGCAAGCAAGCAGTTTGGGCAAGAGGAAATAATT 717
Query 655 TGCTCTTTAGTTGCTGACGCATGTATTCAAGTGTGCCCAAAGAATCCGACAAACTTCAAT 714
|||||||||||| ||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct 718 TGCTCTTTAGTTACTGACGCATGTATTCAAGTCTGCCCAAAGAATCCAACGAATTTCAAT 777
Query 715 GTGGATAATGTCCGTGTTGCCAAGCTTTTGGGAGGAGGCTTGCACAATTCTTGCATAGTC 774
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGGATAATGTTCGTGTTTCCAAGCTTTTGGGAGGAGGCTTGCACAATTCTTGCATAGTC 837
Query 775 CGTGGTATGGTCTTGAAAAGTGATGCTGTTGGTAGCATTAAGCGAATGGAGAAGGCGAAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 CGTGGTATGGTCTTGAAAAGTGATGCTGTTGGTAGCATTAAGCGAATGGAGAAAGCGAAG 897
Query 835 GTTGCTGTATTTGCTGGCGGCGTTGATACTACCGCAACCGAGACCAAAGGAACTGTCCTC 894
||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 898 GTTGCTGTATTTGCTGGTGGCGTTGATACCACTGCAACAGAGACCAAAGGAACTGTCCTC 957
Query 895 ATTCATAGTGCTGAGCAGCTAGAGAACTATGCAAAGACAGAGGAAGCTAAAGTTGAGGAG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATTCATAGTGCTGAGCAGCTAGAGAACTATGCAAAGACAGAGGAAGCTAAAGTTGAGGAG 1017
Query 955 TTGATTAAAGCTGTTGCAGAATCAGGAGCCAAAGTAATTGTTAGTGGGGGATCAATTGGA 1014
||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1018 TTGATTAAAGCAGTTGCGGAATCAGGAGCCAAAGTCATTGTTAGTGGAGGATCAATTGGA 1077
Query 1015 GAAATGGCATTGCATTTCTGTGAGCGCTACAAGATAATGGTATTGAAAATCAGCTCAAAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAAATGGCATTGCATTTCTGTGAGCGCTACAAGATAATGGTATTGAAAATCAGCTCAAAG 1137
Query 1075 TTTGAACTGAGGCGCTTCTGCCGTACAGCTGGGGCTGTCGCCCATTTGAAGCTTAGCCGG 1134
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 TTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATTTGAAGCTTAGCCGG 1197
Query 1135 CCAAGCCCTGATGATCTGGGATATGTTGATTCTATATCAGTTGAGGAAATTGGTGGTGTG 1194
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 CCAAGCCCTGAAGATCTTGGATATGTTGATTCTATATCGGTTGAGGAAATTGGTGGTGTG 1257
Query 1195 ACAGTCACGATTGCAAGAAACGAGGAAGGTGGTAACTCCATCTCTACCGTGGTTTTGCGT 1254
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1258 ACAGTCACGATTGCAAGAAACGAGGAAGGTGGTAACTCCATCTCCACTGTGGTCTTGCGT 1317
Query 1255 GGAAGCACAGATAGCATTTTGGACGACCTTGAGAGAGCTGTTGATGATGGTGTTAATACA 1314
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1318 GGAAGCACAGATAGCATTTTGGACGACCTTGAGAGAGCTGTTGATGATGGAGTTAACACA 1377
Query 1315 TACAAGGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCTACCGAGATAGAA 1374
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1378 TACAAGGCCATGTGCAGAGACAGCCGTATTGTTCCCGGGGCTGCAGCGACTGAAATAGAG 1437
Query 1375 TTGGCTCAAAGATTGAAGGAATATGCCAATGCAGAAATAGGGTTAGACAAATATGCCATC 1434
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1438 TTGGCTCAAAGGTTGAAGGAATACGCCAATGCAGAAATAGGGTTGGACAAATATGCCATC 1497
Query 1435 TCCAAATACGCTGAGAGTTTTGAGTTTGTACCCAAAACCCTTGCAGATAATGCTGGCCTC 1494
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1498 ACCAAATACGCTGAGAGTTTTGAGTTTGTACCCAAGACCCTTGCAGATAATGCTGGCCTC 1557
Query 1495 AATGCCATGGAAATCATAGCCGCTCTGTACACTGGACATGGATCTGGAAACACAAAACTA 1554
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AATGCGATGGAAATCATAGCCGCTCTGTACACTGGACATGGATCTGGAAACACAAAACTA 1617
Query 1555 GGCATTGACTTAGAGGAAGGTGCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGCATTGACTTAGAGGAAGGTGCTTGTAAAGATGTTTCAGAGACAAAAGTATGGGATCTT 1677
Query 1615 TTTGCAACCAAGTTATTTGCTCTTAGATATGCTTCAGATGCTGCATGCACTGTACTTCGT 1674
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1678 TTTGCAACCAAGTTATTTGCCCTTAAATATGCTTCAGATGCTGCATGCACTGTACTTCGT 1737
Query 1675 GTAGACCAGATTATAATGGCGAAACCAGCCGGTGGACCAAGGAGAGATGCAGCTCAAGCT 1734
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 GTAGACCAGATTATAATGGCGAAACCAGCAGGTGGACCAAGGAGAGATGCAGCTCAAGCT 1797
Query 1735 GCAGGTGCTGGTGCGGAGGAAGACTAAGCCGGAGAACAATTACCTCGTAGTGAAGCTCTC 1794
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1798 GCAGGTGCTGGTGCGGAGGAAGACTAAGCCGGAGAACAAATACCTCGTAGTGAAACTCTC 1857
Query 1795 TCTTCTTTTGTAACCTTTTGTTCTTTCAATTCTGAGAAAATTTTGGTGTGTCTCAGTTTA 1854
| | ||||||||||||| ||||| | || ||||||||||||||||| ||||||||||||
Sbjct 1858 T-T-CTTTTGTAACCTTCTGTTCCTGAAAGTCTGAGAAAATTTTGGTATGTCTCAGTTTA 1915
Query 1855 AGATTTGTGATCTTTGTATAA-CAC-ACCTACTTAAGTGTTTTGCCTTCtttttttGTT 1911
|||||||||||||||||| | ||| ||| |||||||||||||||||||||||| ||||
Sbjct 1916 AGATTTGTGATCTTTGTA-ACGCACCACCAACTTAAGTGTTTTGCCTTCTTTTTCTGTT 1973
Score = 69.4 bits (37), Expect = 1e-10
Identities = 43/46 (93%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1911 TCAACTCTGAAATTTTCCGGTTTAGCTAGTGAAATTATTACTAGGA 1956
||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1994 TCAACACTCAGATTTTCCGGTTTAGCTAGTGAAATTATTACTAGGA 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5