BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477666
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing ... 2004 0.0
> AT3G04070.1 | Symbols: anac047, NAC047 | NAC domain containing
protein 47 | chr3:1061526-1063103 REVERSE LENGTH=1254
Length=1254
Score = 2004 bits (1085), Expect = 0.0
Identities = 1203/1260 (95%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCTTTGTTCATCACCAAAACCAAT 60
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 1 AAAAATTTCAATCTTTGGCTCACTTCTTTGTTTATCTCATAGCTCTTCACCAAAACCAAT 60
Query 61 ATTTTCTCCTTCGTTGTTCTTTCTTTCCTATCAAAACTTTATACTTAAAATATCATTCCA 120
||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 61 ATTTTCTCCTTTGTTGTTCTTTCTTTTCTATCAAAACTTTCTACTTAAAATATCATTCCT 120
Query 121 AGAAA-AATGATAAGCAAGGATCCAAGATCGAGTTTACCACCAGGGTTTCGATTTCATCC 179
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TTAAACAATGATAAGCAAGGATCCAAGATCGAGTTTACCTCCAGGGTTTCGATTTCATCC 180
Query 180 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCGGTCCC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 AACAGATGAAGAACTCATTCTCCATTACCTAAGGAAGAAAGTTTCCTCTTCCCCAGTCCC 240
Query 240 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTTTCGATTATCGCCGATGTCGATATCTACAAATCCGATCCATGGGATTTACCAGCTAA 300
Query 300 GGCTCCATTTGGAGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGAAAATATCCTAA 359
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 301 GGCTCCATTTGGGGAGAAAGAGTGGTATTTTTTCAGTCCGAGGGATAGGAAATATCCAAA 360
Query 360 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACTGACAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 361 CGGAGCAAGACCAAACAGAGCAGCTGCGTCTGGATATTGGAAAGCAACCGGAACAGATAA 420
Query 420 ATTAATTGCGGTAGCGAATGGTGAAGGGTTTCATGAAAACATTGGTATaaaaaaaGCTCT 479
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGATTGCGGTACCAAATGGTGAAGGGTTTCATGAAAACATTGGTATAAAAAAAGCTCT 480
Query 480 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTGTTTTATAGAGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCATGAATA 540
Query 540 TCGTCTTGCCGACTCTTTATCTCCCAAAAGAATCAGCTGTTCTAGGAGCGGTAGTAGCCA 599
|||||||||||| || ||||||||||||||||| | || ||||||||||||| ||||| |
Sbjct 541 TCGTCTTGCCGATTCATTATCTCCCAAAAGAATTAACTCTTCTAGGAGCGGTGGTAGCGA 600
Query 600 AGTCAATAATAATCTTGGAGATAGGAATTTGAAATCTAAAGAATATTCGATGAGGCTGGA 659
||| ||||||||| ||||||||||||| | |||||||||||||||||||| |||||
Sbjct 601 AGTTAATAATAATTTTGGAGATAGGAA--T----TCTAAAGAATATTCGATGAGACTGGA 654
Query 660 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGATTGGGTTCTTTGCCGGATTTACAAGAAATCACACGCTTCATTGTCATCACCTGATGT 714
Query 720 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGCTTTGGTCACAAGCAATCAAGAGCATGAGGAAAATGACAACGAACCATTCGTAGACCG 774
Query 780 CGGAACCTTTTTGCCAAATTTGCAAAACGATCAACCCCTTAAACGTCAGAAGTCTTCTTG 839
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 775 CGGAACCTTTTTGCCAAATTTGCAAAATGATCAACCCCTTAAACGCCAGAAGTCTTCTTG 834
Query 840 TTCATTCTCAAACTTATTAGACGCTACAGATTTGACGTTCCTCGCAAATTTTCTAAACGA 899
||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 835 TTCGTTCTCAAACTTACTAGACGCTACAGATTTGACGTTTCTCGCAAATTTTCTAAACGA 894
Query 900 AACCCCGGAAAATCGTTCTGAATCGGATTTTTCTTTCATGAGTGGCAATTTCTCTAATCC 959
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 895 AACCCCGGAAAATCGTTCTGAATCAGATTTTTCTTTCATGATTGGCAATTTCTCTAATCC 954
Query 960 TGACATCTACGGAAACCATTACTTGGATCAGAAGTTACCACAGTTGAGCTCTCCTACTTC 1019
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 955 TGACATTTACGGAAACCATTACTTGGATCAGAAGTTACCGCAGTTGAGCTCTCCCACTTC 1014
Query 1020 AGAGACAAGCGGCGTCGGAAACAAAAGAGAGAGACTAGATTTTGCGGAAGAAACGATAAA 1079
||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1015 AGAGACAAGCGGCATCGGAAGCAAAAGAGAGAGAGTGGATTTTGCGGAAGAAACGATAAA 1074
Query 1080 CGCTTCGAAGAAGATGATGAACACCTATAGTTACAATAATAGTATAGATCAAATGGATCA 1139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1075 CGCTTCGAAGAAGATGATGAACACATATAGTTACAATAATAGTATAGATCAAATGGATCA 1134
Query 1140 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCTTGATGAGTTCTCACCTTCA 1199
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1135 TAGTATGATGCAACAACCTAGTTTCCTGAACCAGGAACTCATGATGAGTTCTCACCTTCA 1194
Query 1200 GTATCAAGGCTAGAGAGAATATTTATTTGAAAACCTAATGACGAATTGGGGATCATTCGG 1259
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 1195 ATATCAAGGCTAGAGAGAATATTAATTTGAAAACCTAATCACGAATTAGGGATCATTCGG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5