BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477673 Length=1429 Score E Sequences producing significant alignments: (Bits) Value AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-p... 2274 0.0 AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phospha... 1365 0.0 > AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-phosphate dehydrogenase C subunit 1 | chr3:1080950-1083530 FORWARD LENGTH=1543 Length=1543 Score = 2274 bits (1231), Expect = 0.0 Identities = 1372/1437 (95%), Gaps = 22/1437 (2%) Strand=Plus/Plus Query 1 CTCCACGTTCTTCTCTCTTTTAAATAGACC-CTTCACGG-ACCCTTCTCACTCACCTATC 58 |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 1 CTCCACGTTCTTCTCTCTTTTAAATA-ACCTCTTCACGGAACCCTTCTCACTCACCTATC 59 Query 59 TCACTGTAAAATCTCTCTCTGTGAATCTCATCTTCAACCTCTCTTAC-ACACTCGCGTTT 117 ||||| ||||||||||||||| |||||||||||||||||||| | | | |||| ||||| Sbjct 60 TCACTCTAAAATCTCTCTCTGCCAATCTCATCTTCAACCTCTC-T-CTA-ACTCTCGTTT 116 Query 118 TCGATTCAAACAATGGCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATC 177 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 117 TCGATTC-TACAATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATT 175 Query 178 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAAC 237 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 176 GGTCGTTTGGTTGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAAC 235 Query 238 GACCCCTTCATCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGT 297 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 236 GACCCCTTCATCACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGT 295 Query 298 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 CAATGGAAACACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAG 355 Query 358 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCT 415 Query 418 GACTATGTTGTTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTG 477 ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 416 GACTACGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTG 475 Query 478 AAGGGTGGGGCCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTT 537 |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 476 AAGGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTT 535 Query 538 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGC 597 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 536 GTTGGTGTCAACGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGC 595 Query 598 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAA 657 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 596 ACCACTAACTGCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAG 655 Query 658 GGTCTTATGACAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 717 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 656 GGTCTTATGACTACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCA 715 Query 718 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGA 775 Query 778 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCCCTTAACGGAAAGTTGACCGGCATGTCT 837 |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| Sbjct 776 GCTGCCAAGGCTGTCGGAAAGGTGCTTCCAGCTCTTAACGGAAAGTTGACTGGAATGTCT 835 Query 838 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 TTCCGTGTCCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCT 895 Query 898 GCTACCTATGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGA 957 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 896 GCTACCTACGATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGA 955 Query 958 ATTCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCG 1017 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 956 ATCCTTGGATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCG 1015 Query 1018 AGCATATTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCA 1077 ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1016 AGCATTTTTGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCA 1075 Query 1078 TGGTACGACAACGAATGGGGTTACAGTTCTCGAGTGGTCGACTTGATCGTTCACATGTCA 1137 ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct 1076 TGGTACGACAACGAATGGGGTTACAGTTCCCGTGTGGTCGACTTGATCGTCCACATGTCA 1135 Query 1138 AAGGCCTAAGCTAAGAAGCAGATCTCGAACGACGAGG-AGTGGAAAGTCATCTGTTCATC 1196 ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| Sbjct 1136 AAGGCCTAAGCTAAGAAGCAGATCTCGAATGAT-AGGGAGTGGAAAGTCATCTGTTCATC 1194 Query 1197 CTCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAACCCttt 1256 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1195 CCCTTTTATGGTCTGAATTTGTCGTTTTCGAATAAAATTTCTTTGAACTTGGAAC--TTT 1252 Query 1257 ttttttttttttGGTTTTCTTAATTCTCATTCATGTGAGTTGATGGGAGTTTGTAGACCG 1316 |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1253 TTTTTTTTTT--GGTTTTCTTAATTCTCATTCATGTGAGGTGATGGGAGTTTGTAGACCG 1310 Query 1317 GTGTTTTACTG-AAGCCCTTTCGtttttggcttttgatatattgagtta-c-ttatggtt 1373 |||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 1311 ATGTTTTACTGGAAGCCCTTT-GTTTTTGGCTTTTGATATATTGAGTTAACGTTATGGTT 1369 Query 1374 tttca-ttttgtctc-acttctctttttttCTATATACTAAATCAAATCTGAACGAA 1428 || || |||||| || |||||||||||| ||||||||||||||||||||||||||| Sbjct 1370 TT-CAATTTTGT-TCCACTTCTCTTTTTAACTATATACTAAATCAAATCTGAACGAA 1424 > AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608196-4610647 REVERSE LENGTH=1439 Length=1439 Score = 1365 bits (739), Expect = 0.0 Identities = 933/1027 (91%), Gaps = 12/1027 (1%) Strand=Plus/Plus Query 129 AATGGCTGACAAGAAGATTAAG-ATCGGAATCAACGGATTCGGAAGAATCGGTCGTTTGG 187 ||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||| Sbjct 153 AATGGCTGACAAGAAGA-TCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGG 211 Query 188 TTGCTAGAGTTGTTCTTCAGAGGGACGATGTTGAGCTCGTCGCTGTTAACGACCCCTTCA 247 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| Sbjct 212 TTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCA 271 Query 248 TCACCACTGAGTACATGACCTACATGTTCAAGTATGACAGTGTTCACGGTCAATGGAAAC 307 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| | Sbjct 272 TCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGC 331 Query 308 ACAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTG 367 || |||| || ||| | |||||||| || || |||||||||||||||||||||||||||| Sbjct 332 ACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTG 391 Query 368 TTTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTATGTTG 427 ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| Sbjct 392 TTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTG 451 Query 428 TTGAGTCTACCGGTGTCTTCACTGACAAAGACAAGGCTGCCGCTCACTTGAAGGGTGGGG 487 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 452 TTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTGAAGGGTGGTG 511 Query 488 CCAAGAAGGTTGTCATCTCTGCCCCCAGCAAAGACGCTCCCATGTTTGTTGTTGGTGTCA 547 | || |||||||||||||||||||| |||||||| || |||||||| ||||||||||||| Sbjct 512 CTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTTGTTGGTGTCA 571 Query 548 ACGAGCACGAATACAAGTCCGACCTTGACATCGTCTCCAACGCTAGCTGCACCACTAACT 607 |||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||||||| Sbjct 572 ACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGCACCACTAACT 631 Query 608 GCCTTGCTCCCCTTGCCAAGGTTATCAATGACAGGTTTGGAATTGTTGAAGGTCTTATGA 667 |||||||||| |||||||||||||| |||||||||||||| |||||||| || || |||| Sbjct 632 GCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAGGGACTCATGA 691 Query 668 CAACAGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACT 727 | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 692 CCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCAATGAAGGACT 751 Query 728 GGAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGG 787 |||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| Sbjct 752 GGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGG 811 Query 788 CTGTCGG-AAAGGTGCTT-CCAGCCCTTAACGGAAAGTTGACCGGCATGTCTTTCCGTGT 845 |||| || |||| || || ||| |||| || ||||| |||||||| |||||||||||||| Sbjct 812 CTGTTGGGAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACCGGAATGTCTTTCCGTGT 869 Query 846 CCCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTA 905 |||||||||||||||||||||||||| || || || ||||| ||||||||||| || || Sbjct 870 TCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATA 929 Query 906 TGATGAAATCAAAAAGGCTATCAAGGAGGAATCTGAAGGCAAACTCAAGGGAATTCTTGG 965 || |||||||| ||||| |||||||||||||||||||||||| | ||||||||| |||| Sbjct 930 CGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGAATT-TTGG 988 Query 966 -ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGTGACAACAGGTCGAGCATAT 1024 |||||| |||||||||||||| || || ||||| ||||||||||||||||| ||||| | Sbjct 989 GATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCAAGCAT-T 1047 Query 1025 TT-GACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAACTGGTGTCATGGTAC 1083 || || ||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1048 TTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTAC 1107 Query 1084 GACAACGAATGGGGTTACAGTTCTCGAGTGGTCGAC-TTGATCGTTCACATGTCAAAGGC 1142 |||||||||||||||||||||||||| || || ||| || |||||||||||||||||||| Sbjct 1108 GACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTT-ATCGTTCACATGTCAAAGGC 1166 Query 1143 CTAAGCT 1149 ||||||| Sbjct 1167 CTAAGCT 1173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70431364635 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5