BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477682 Length=1447 Score E Sequences producing significant alignments: (Bits) Value AT3G04210.1 | Symbols: | Disease resistance protein (TIR-NBS c... 1164 0.0 > AT3G04210.1 | Symbols: | Disease resistance protein (TIR-NBS class) | chr3:1105963-1108069 REVERSE LENGTH=1940 Length=1940 Score = 1164 bits (630), Expect = 0.0 Identities = 879/996 (88%), Gaps = 29/996 (3%) Strand=Plus/Plus Query 470 CTTAGTTGGGATGGAGGCTCATATGAAAAAGTTGGAACTAATGTTATACCTAGATTTGAA 529 ||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |||| Sbjct 781 CTTAGTTGGGATGGAGGATCATATGAAAAAATTGGAACGAATGTTATACCTAGATCTGAA 840 Query 530 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACCAGCATCGCCAG 589 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 841 TGATGTGAGGATGATAGGGATTTGGGGTCCTCCTGGGATTGGTAAGACTTCCATCGCCAG 900 Query 590 AGTTTTATTTAGCAAACACTCTGACAGTTTCGACTTGAGTGTCTTTATGGAGAATGTCAA 649 |||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |||| | Sbjct 901 AGTTTTATTTCGAAAACATTCTGACAGTTTCGATTTGAGTGTCTTTATGGAGACTGTC-A 959 Query 650 AGGACGATATACAAGACCAGGTTGTGCGGATGAACACAGTCTTAAGCTGCACTTACATCA 709 ||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| || Sbjct 960 AGG--GTTATACAAGACCAGGTTGTTCGGATGAACACGGTCTTAAGCTGCACTTACAGCA 1017 Query 710 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATATAGAAGTTCCTCACTTAGGTGTTAT 769 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 1018 GCAGTTTCTGTCTCAAATATTCAACCAGAAGGATGTAGAAGTTCCTCACTTAGGAGTTGT 1077 Query 770 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTCCTTGATGACGTCGATCAGCCAGC 829 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| Sbjct 1078 ACAAGACAGGTTAAGAGACAAGAGAGTGCTTGTTGTGCTTGATGACGTTGATCAGTCAGC 1137 Query 830 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATTGT 889 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1138 ACAATTAGAAGCCATGGCCAAGGAAAATAAGTGGTTTGGTCCTGGAAGTCGGATTATCAT 1197 Query 890 CACCACTCAAGGTCGAAGACTTTTGGAAGGACATGGAATCAAAGATATGTACAAGGTGGA 949 |||||| |||| ||||||||||||| ||| |||||||||||||||| ||||||||||||| Sbjct 1198 CACCACGCAAGATCGAAGACTTTTGAAAGCACATGGAATCAAAGATGTGTACAAGGTGGA 1257 Query 950 TTTTCCACCACCTCG-TGAAGCTTTTCAAATCTTCTGCATGGATGCTTTTGGTCAAGCCT 1008 ||| ||||||||| | ||| ||||||||||||||||||||| ||||||||||| || ||| Sbjct 1258 TTTACCACCACCT-GATGATGCTTTTCAAATCTTCTGCATGTATGCTTTTGGTAAAACCT 1316 Query 1009 CTCCTAAACACGGTTTCGAGGAGCTTGCATGGGAAGCTACATACGTGTCTGGTATACACC 1068 |||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1317 CTCCAAAACATGGTTTCGAGGAGCTTGCATGGGAAGCTACATACCTTTCTGGTATACACC 1376 Query 1069 CTTCGGGTATAAGAAGTATGGGTTCTTATTTCCGGGGAATGTCAAAGCTGGAGTGGGCAG 1128 ||||||| |||| ||||||||| |||||||||||| ||||||||| | |||||||| | Sbjct 1377 CTTCGGGAATAAAAAGTATGGGCTCTTATTTCCGGAAAATGTCAAAACCGGAGTGGGTAA 1436 Query 1129 ACGCATTACTAAGGTTAAGGACTAATAACCCTGACTCTGGTTCTGTGAGGACCTACAAAA 1188 |||| |||| |||||||||||||| ||| | |||||||| ||| ||||||| ||| || Sbjct 1437 ACGCGTTACAAAGGTTAAGGACTAGTAAGCTTGACTCTGAATCTCCGAGGACCCACAGAA 1496 Query 1189 AAG-TCGGAA-TCAGAATCAGAAATGAAAAACAGAAGATTG-TGTCACGTATGATGAGCT 1245 | | || || | ||| | || |||| |||||||||||| | ||||| || | ||||| Sbjct 1497 A-GCTCATAAAT-AGATTAAGGAATGTAAAACAGAAGAT-GCTGTCAAATACGTTGAGC- 1552 Query 1246 CA-ATAAGGAGGAAACAAATAGCAGCAGCAGAAG-AAAGAGCTGCTAGTGTTTATGAAAG 1303 | ||||||| | | ||||||||| |||||| || ||| |||||||||||||||||||| Sbjct 1553 CGTATAAGGAAGCACCAAATAGCATCAGCAGCAGCAAA-AGCTGCTAGTGTTTATGAAAC 1611 Query 1304 AACTATGAAAGA-G-G-TGGATTCTTCTC-CTGTGTCGTCT-ACTCGGGGACTTGCTGAA 1358 || ||| ||||| | | ||||||| || | | | ||||| | | || |||||| |||| Sbjct 1612 AAGTATAAAAGAAGAGGTGGATTCGTC-CGCGGAGTCGT-TGAATCATTGACTTGGTGAA 1669 Query 1359 GAA--A--GAAACTGATAGAGTTGAAGAACCACTTCGAAGGACATGAAAC--C-TGATCA 1411 ||| | ||||||||||||||||||||||||| || ||| ||||||||| | |||||| Sbjct 1670 GAAGTAAAGAAACTGATAGAGTTGAAGAACCACGTCCAAGAACATGAAACTACCTGATCA 1729 Query 1412 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1447 |||||||||||||||||||||||||||||||||||| Sbjct 1730 AACCACCAAAACGAAAGTATGTGCAATGAGTGATTT 1765 Score = 623 bits (337), Expect = 2e-177 Identities = 428/470 (91%), Gaps = 14/470 (3%) Strand=Plus/Plus Query 1 TTGCTTCACATAGCTCTCTAAACAATCTCTTTGTCCCTCTCTATACCATACGAATAATGG 60 |||||||| ||||||||||||| || |||||||| | |||||||| |||||||||||||| Sbjct 9 TTGCTTCATATAGCTCTCTAAAAAAGCTCTTTGTTCGTCTCTATATCATACGAATAATGG 68 Query 61 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 ATTCTTATTTTTTCCTTGGCACTGTTGTTGTTGTTGCTCTTGCAATCTACACGCTTTTGG 128 Query 121 GAATGCTATCTTTTATGGTTTATAGAAAATTCAGGTTCCATCTAGACAAGAA-AA-ACAT 178 ||| ||||||||||||||||||||||||||||||| || | ||| ||||| || | || Sbjct 129 GAACAATATCTTTTATGGTTTATAGAAAATTCAGGTTACACCAAGAGAAGAACAACATAT 188 Query 179 -AGCTTGtttttctttttcatcttttacatctttctcatcttgttcatc-tctttcatca 236 | ||||||||||||||||||| || |||| || | || |||||| || |||||| Sbjct 189 CATCTTGTTTTTCTTTTTCATC--TT---GCTTT-TC-T-TT-TTCATCTTC-TTCATCG 238 Query 237 ACTTCGTCTCCCAGTCGGAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 296 |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 239 ACTTCGTCGCCCGGTCGTAAACACCAAGTCTTTCCAAGTTTCCACGGGGCAGATGTACGC 298 Query 297 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGCAATCGACATATTCATT 356 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 299 AAATCCTTTCTCAGCCACATCATGAAGGAGTTCAAAAGCAAGGGAATCGACATATTCATT 358 Query 357 GATAAAGATATCAAGAGGAGTAAGTCCATCGGTCCTGAGCTCATAGAAGCTATCAAAGGA 416 |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| Sbjct 359 GATAAAGATATCAAGAGGGGTAAGTCCATCGGTCCTGAGCTCACAGAAGCTATCAGAGGA 418 Query 417 TCGAGGATTGCAATTGTCTTCCTCTCGAGGAACTATGCTTCTTCTTCGTG 466 |||||| |||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 419 TCGAGGGTTGCGATTGTCTTCCTCTCGAGGAAATATGCTTCTTCGTCGTG 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71334974445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5