BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477721
Length=2024
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing p... 3182 0.0
> AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250553-1254873 REVERSE LENGTH=2058
Length=2058
Score = 3182 bits (1723), Expect = 0.0
Identities = 1950/2054 (95%), Gaps = 37/2054 (2%)
Strand=Plus/Plus
Query 1 ACCCGCCTCCATTGTTACCGGAAtctctctctctctcCGCCGAACCTCTTCGATTCAAGT 60
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 1 ACCCGCCTCCATTGTTACCGGAATCTCTCTCTTTCTCCGCCGAACTTCTTCGAATCAAGT 60
Query 61 TTCCGTTTATCACTCTACTACTGTTTAAGGTTCCATTGATACCACCGCTCTAGTCATGGC 120
||||||||||||||||| || |||| ||| ||||| ||||||||||||||||||||||||
Sbjct 61 TTCCGTTTATCACTCTAATATTGTTAAAGTTTCCACTGATACCACCGCTCTAGTCATGGC 120
Query 121 TGAAGCTGAAGATCAGCAAAATTTTGTTGCACACAATGGAGATCAGGTACCAGCTCAGGG 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 121 TGAAGCTGAAGATCAGCAAAATTTCGTTGCACACAATGGAGATCAGGTACCAGATCAAGG 180
Query 181 GTTAGATGAGGTGCATAATGGGTTACCGTA-C-----C------AG------GTTCACCA 222
|| ||||||| ||||||||||||||||||| | | || ||||||||
Sbjct 181 GTCAGATGAGTTGCATAATGGGTTACCGTACCAGGTTCATGATGAGACCCTTGTTCACCA 240
Query 223 ACCATACGAGGTAT-CAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGA 281
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 ACCATACGAGGT-TGAAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCCGA 299
Query 282 CTCTTGAACCTCAGCAGTACGAGCTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 341
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTTGAACCTCAGCAGTACGAGG 359
Query 342 TTCATGATCAATTAGAGTATCAACAATACCAGTTGCAGGACCAGACTCATGAAGATGTCC 401
|| ||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 360 TTGATGATCAGTTAGAGTATCATCAATACCAGTTGCAGGACCAGGCTAATGAAGATGTCC 419
Query 402 AAGATCAGCCGCAAGATGACCTACAATATCAGCCACAAGATCAGGAGCAGTATCAGTTAC 461
||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 420 AAGATCATTCGCAAGATGACCTACAATATCAGCCACAAAATCAGGAGCAGTTTCAGTTAC 479
Query 462 AAGACGAGGCTCATGATCAGGCCCAGTATCAGGCAG-AAGGTGAGGCACAAGATCACAAT 520
|||||||||||||||||||||| ||||||||||| | ||||||| | |||||||||||||
Sbjct 480 AAGACGAGGCTCATGATCAGGCTCAGTATCAGGC-GCAAGGTGATGTACAAGATCACAAT 538
Query 521 GGTGATGATGTGCAAGATAAAGTAGAAGATGAGGAAGGAA-T--T-----TC-TGAGTCT 571
|||||||| ||||||||||||||||||||||||||||||| | | || |||||||
Sbjct 539 GGTGATGAAGTGCAAGATAAAGTAGAAGATGAGGAAGGAATTCCTGAGCATCTTGAGTCT 598
Query 572 CTACAGAAATCAGAGTCTGAAGAAGGTGCAACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 631
||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 599 CTACAGAAATCAGAGCCTGAAGAAGATGCGACAGTTGGAGGTGAGGAGAAGAGGTGGCCG 658
Query 632 GGATGGCCCGGAGAGACGGTCTTCCGCATGCTGGTTCCTGCACAGAAAGTGGGTAGTATC 691
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 659 GGATGGCCCGGAGAGACGGTATTCCGTATGCTGGTTCCTGCACAGAAAGTGGGTAGCATC 718
Query 692 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTGGTCGCAAAGGTGATGTCATTAAGAAAATAGTTGAGGAGACAAGGGCTCGAATAAAG 778
Query 752 ATTCTCGATGGTCCTCCAGGCACAACCGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 811
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 ATTCTCGATGGTCCTCCAGGCACAACAGAAAGAGCTGTTATGGTTTCTGGTAAAGAAGAG 838
Query 812 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTGCACATGCGGATAGTT 871
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 CCCGAATCATCTCTACCACCTTCTATGGATGGCCTTCTTAGAGTCCACATGCGGATAGTT 898
Query 872 GATGGTTTGGATGGTGAACCTTCTCAAGCCCCTCCGGCTTCAAAGGTGTCAACAAGATTA 931
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 GATGGTTTGGATGGTGAAGCTTCTCAAGCCCCTCCGCCTTCAAAGGTGTCAACAAGATTA 958
Query 932 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTAGTCCCAGCATCTCAGGCTGGAAGTTTGATTGGAAAACAGGGAGGAACAGTTAAAGCT 1018
Query 992 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTGCCTGTTTTT 1051
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 ATTCAAGAAGCATCCGCTTGTATAGTCAGAGTTCTTGGATCAGAGGATTTACCTGTTTTT 1078
Query 1052 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAAAGCC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1079 GCTCTTCAAGACGATAGGGTTGTTGAAGTTGTGGGGGAACCAACAAGTGTTCATAGAGCC 1138
Query 1112 TTGGAGCTGATTGCATCACATCTAAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1171
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTGGAGCTGATTGCGTCACATCTCAGAAAGTTCTTGGTTGATCGTAGCATCATCCCATTC 1198
Query 1172 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGATCATATGCCACCACCACATCAG 1231
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1199 TTTGAAAATCAGATGCAAAAGCCAACTCGCCAAATGGACCATATGCCACCACCACACCAG 1258
Query 1232 GCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCATGGGGTCCTCCTCAAGGTCATGCCCCAAGTGTTGGTGGAGGAGGCTATGGTCACAAC 1318
Query 1292 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCACCTCCATATATGCAACCACCTCCTAGACATGATAGTTACTATCCTCCTCCTGAGATG 1378
Query 1352 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CGTCAACCTCCAATGGAGAAACAGCCTCATCAAGGTATATCTGCATATGGTAGAGAGCCT 1438
Query 1412 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCTATGAATGTGCACGTATCATCAGCCCCACCAATGGTCGCTCAGCAAGTTACGCAGCAA 1498
Query 1472 ATGCAGATTCCACTTTCTTATGCTGATGCTGTAATTGGGACATCAGGTTCAAACATAAGC 1531
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1499 ATGCAGATTCCACTGTCTTATGCTGATGCTGTAATTGGGACGTCGGGTTCAAACATAAGC 1558
Query 1532 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TACACTAGACGTCTTAGTGGAGCAACAGTAACTATTCAGGAGACCAGGGGAGTACCTGGT 1618
Query 1592 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCTATGCAGCTAATT 1651
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1619 GAAATGACTGTTGAGGTTAGCGGAACTGGCTCACAAGTCCAAACTGCCGTGCAGCTTATT 1678
Query 1652 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CAGAACTTCATGGCTGAAGCTGGAGCGCCGGCACCAGCACAGCCTCAAACTGTAGCACCA 1738
Query 1712 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTCTACGCAGCAGCTCCAACA 1771
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1739 GAGCAGCAAGGCTATAACCCATACGCAACACACGGCTCAGTTTACGCAGCGGCTCCAACA 1798
Query 1772 AACCCGCCTGGAGGATACGCTACAGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1831
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1799 AACCCGCCTGGAGGATACGCTACGGATTACAGCTCAGGCTACGGTTACTGATGAAAGATT 1858
Query 1832 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGAAAAACGCTAGATGC 1891
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1859 TTAAGTTTCTTTAGAATGTTTTACTAGTAGTTGCAAGCAAGAGTGGAAA-CGCTAGATGC 1917
Query 1892 CTAATTGAGTATATGCTGTTATTAGCGAGCGCCCTGTGTACTGAGAATCAATTATTATTA 1951
||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||||| |
Sbjct 1918 CTAATCGAGTATATGTTGTTATTAGCGAGCACTCTGTGTACTGACAATCAATTATTAT-A 1976
Query 1952 TATCAGTTGTTTTGAGACTTCTTCATTTGTGTACTGTTCAAAACATT-AGTCTACCCGGA 2010
| || ||||||||||||||||||||||||||||| |||| |||||| | |||| |||||
Sbjct 1977 T--CACTTGTTTTGAGACTTCTTCATTTGTGTACTATTCATAACATTGA-TCTAACCGGA 2033
Query 2011 AATTTTCTTTATAT 2024
||| ||||||||||
Sbjct 2034 AATCTTCTTTATAT 2047
Score = 128 bits (69), Expect = 2e-28
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 227 TACGAGGTATCAGATCCGATTCTTGAACCTCAGCAGTACGAGGTACCAGATCAGACTCTT 286
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 281 TACGAGGTACCAGATCCGACTCTTGAACCACAGCAGTACGAGGTACCAGATCAGACTCTT 340
Query 287 GAACCTCAGCAGTACGAG 304
||||||||||||||||||
Sbjct 341 GAACCTCAGCAGTACGAG 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100300688910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5