BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477742 Length=1201 Score E Sequences producing significant alignments: (Bits) Value AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protei... 1679 0.0 AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional re... 80.5 3e-14 > AT3G04730.1 | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288612-1290602 REVERSE LENGTH=1279 Length=1279 Score = 1679 bits (909), Expect = 0.0 Identities = 1053/1119 (94%), Gaps = 24/1119 (2%) Strand=Plus/Plus Query 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACAT-CCGctctctctctctctctcCAGA 59 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| || | Sbjct 1 ATTTAGCCCTTTGTTTCTCTACACACATCTCACATCCCCCTATCTCTCTCTCTCTTCAAA 60 Query 60 CAATTTAGTT-CCC-AAAAGA-A-C----Taa--aaaa-aaaaaCCCTAGAAGCCGAAGA 108 | ||||||| ||| |||| | | | || |||| ||||||||||||||||||||| Sbjct 61 CGTTTTAGTTCCCCAAAAAAATATCAAAAGAACTAAAAGAAAAACCCTAGAAGCCGAAGA 120 Query 109 ATTTACTACTCG-T-T-G-TCGGATCACCGAACTTATTACTCGTTGAGAATCATTATATC 164 || | ||||||| | | | |||||||||| |||| |||||||||||| |||||||||||| Sbjct 121 ATCTCCTACTCGTTGTCGATCGGATCACCTAACTAATTACTCGTTGATAATCATTATATC 180 Query 165 AAAAAATATGATTAATTTCGAGGCGACGGAGCTGAGGTTAGGGCTGCCGGGTGGTAATCA 224 | ||||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct 181 GAGAAATATGATTAATTTTGAGGCCACGGAGCTGAGATTAGGGCTACCGGGTGGGAATCA 240 Query 225 CGGAGGAGAAATGGTC-GGAAAAAATAATGGCAAAAGAGGATTTTCTGAGACCGTTGATC 283 |||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||| Sbjct 241 CGGAGGAGAAATGG-CTGGAAAAAATAATGGTAAAAGAGGATTTTCTGAGACTGTTGATC 299 Query 284 TCAAACTGAATCTTTCATCAACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 343 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCAAACTGAATCTTTCATCGACGGCTATGGATTCAGTTTCCAAAGTCGATTTAGAGAATA 359 Query 344 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TGAAGGAGAAGGTCGTAAAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGTAC 419 Query 404 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGTAG 463 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 420 GATCTTTCCGCAAGAACGTCATGTCCGGCCAAAAACCGACCACCGGAGATGCCACCGAAG 479 Query 464 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCATCCGTATGTGCCGCCG 523 ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 480 GAAACGATAAGACTTCTGGCAGCAGTGGAGCCACCTCATCCGCCTCCGCATGTGCCACCG 539 Query 524 TCGCTTACGTGAAGGTTAGCATGGATGGCGCACCGTACCTACGGAAAATTGACTTGAAAC 583 | ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 540 TGGCTTATGTGAAGGTTAGCATGGACGGTGCACCGTACCTACGGAAAATTGACTTGAAAC 599 Query 584 TCTACAAAACTTACCAAGATCTATCCGACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 643 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 600 TCTACAAAACTTACCAAGATCTCTCCAACGCCTTAAGCAAAATGTTTAGCTCTTTTACCA 659 Query 644 TAGGCACCTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 703 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TAGGCAACTATGGACCACAAGGAATGAAAGATTTCATGAATGAGAGTAAATTGATCGATC 719 Query 704 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TTCTAAACGGATCAGATTATGTTCCAACATATGAAGATAAAGATGGCGACTGGATGCTTG 779 Query 764 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TAGGAGACGTACCGTGGGAGATGTTTGTTGATTCATGCAAACGTATACGAATAATGAAGG 839 Query 824 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 GATCAGAAGCAATCGGACTTGCTCCAAGGGCATTAGAAAAGTGCAAGAACAGAAGTTGAG 899 Query 884 TTCTCGACGACATTTCTTGTTCTTACCTAAAAAAGGAAGAAAGACTGTTTCGATCGGTTG 943 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 900 TTCTCGACGACATTTCGTGTTCTTACCTAAAAAAGGAAGAAAGCCTGTTTCGATCGGTTG 959 Query 944 GATATCTCGAACCGAGAAAAGCCAAACCGGCTCGAAACTACTGTTCCGAGCAAGGAGTTT 1003 ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| Sbjct 960 GATATCTCGAACCGAGAAA-GCTAAACCGGCTCGAAACTATTGTTCCGAGCAAGGAGTTT 1018 Query 1004 GCttataatattaattaataataatattaatattgtgatgtattacattt-aaaaatttt 1062 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || Sbjct 1019 GCTTATAATATTAATTAATAATAATATTAATATTGTGGTGTATTACATTTTAAAAAATT- 1077 Query 1063 aaaCCGTTTTTGTTATATGTATTATGTA--TAT-TTAAT 1098 ||| ||||||||||||||||||||| || ||| ||||| Sbjct 1078 AAATCGTTTTTGTTATATGTATTATATACATATATTAAT 1116 > AT1G04250.1 | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136258-1138613 FORWARD LENGTH=1087 Length=1087 Score = 80.5 bits (43), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 361 AAACCACCAGCCAAGGCACAAGTTGTGGGATGGCCACCGGT-ACGATCTTTCCGCAAGAA 419 ||||| || |||||||||||||||||||||||||||||||| | |||| | ||| ||||| Sbjct 350 AAACCTCCGGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGA-GATCATACCGGAAGAA 408 Query 420 CGTCATG-T--CCGGCCAAAAA 438 ||| ||| | || |||||||| Sbjct 409 CGTGATGGTTTCCTGCCAAAAA 430 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58985640375 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5