BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477807 Length=1661 Score E Sequences producing significant alignments: (Bits) Value AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein | ... 2141 0.0 > AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1476982-1478730 FORWARD LENGTH=1749 Length=1749 Score = 2141 bits (1159), Expect = 0.0 Identities = 1352/1441 (94%), Gaps = 29/1441 (2%) Strand=Plus/Plus Query 245 TATCTCTTC-TTCTGAATCTTCAAATGTCTTTTTTAGTACGCTATAAACTCGCTTTCTTC 303 ||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 295 TATCTCTTCTTTATGAATCTTCAAATGTCTTTTTT--TACGCTATAAACTCACTTTCTTC 352 Query 304 TTCTCCAAGAGCCaaaaaaacac-caaaaaaaaa---aaaa-CATGAGAAGCTCCGATCA 358 | |||||||||||||| |||||| |||||||||| |||| |||||||||||||||||| Sbjct 353 TCCTCCAAGAGCCAAATAAACACACAAAAAAAAACTCAAAATCATGAGAAGCTCCGATCA 412 Query 359 TACGCCGTTTTCCGGCGTTTTGCCGATTGTTTTATTTCTTATATTATCATCAGCGGATCT 418 || | ||||| |||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 413 TATGGCGTTTGCCGGCGTTTTGCCGATTGTTTTCTTGCTTATATTATCATCAGCGGATCT 472 Query 419 AGCGGCGAGTCAATCACAGCCCGGTCCAGCAAATCAACCGTATAACTACGGCAGGCTAAG 478 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 473 AGCAGCGAGTCAATCACAGCCCGGTCCAACAAATCAACCGTATAACTACGGCAGACTAAG 532 Query 479 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 592 Query 539 CTCCATCTACTTCCGTCACTGCTCCGGCGTACCAGACGCCGGCGTTTCTCCAGCTGGTGG 598 ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 593 CTCTATCTACTTCCGTCACTGCTCAGGCGTACCAGACGCCGGTGTTTCTCCAGCTGGTGG 652 Query 599 TGCTCGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGCTTCAGTTGTCGA 658 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 653 AGCTAGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGTTTCAGTTGTCGA 712 Query 659 GACTTTTCCTACGTTCTTGTACTCTGATGTCAAAACGCAGAAGCTTGGCAAAGGAGAGTT 718 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 713 GACTTTTCCTACGTTCTTGTACTCAGATGTGAAAACGCAGAAGCTTGGTAAAGGAGAGTT 772 Query 719 AGAGTGTGCGATTTGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 778 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 AGAGTGTGCGATATGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 832 Query 779 GTGCGATCACGTGTTTCACCCTCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 838 ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 833 GTGTGATCACGTGTTTCATCCGCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 892 Query 839 TCCTGTTTGCAGAGCGAATCTTGCTGAACAGGTTGCTGAAGGTGAATCGGTTGAACCGGG 898 ||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 893 TCCCGTTTGCAGAGCGAATCTTGCTGAACAGGTAGCTGAAGGTGAGTCAGTTGAACCGGG 952 Query 899 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTTATTAC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 953 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTGGTTAC 1012 Query 959 TGCTCCGGTACCGGAACAATTGGTGACGAGTGAAATCGATTCGAGGAGATTACCTGGAGT 1018 ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| || Sbjct 1013 TGCACCGGTACCGGAACAATTGGTGACTAGTGAAGTCGATTCGAGGAGATTACCTGGTGT 1072 Query 1019 ACCGATGGAT-TTAAAACGAGTCAAATTCTCGAGATCGCATACCACCGGACATTCGGTGG 1077 |||| ||||| |||||| |||| |||||||||||||||||||| || ||||||||||||| Sbjct 1073 ACCGGTGGATCTTAAAA-GAGTTAAATTCTCGAGATCGCATACGACGGGACATTCGGTGG 1131 Query 1078 TTCAACCGGGAGAATGTCCCGAACGGTTTACTCTTCGGTTACCGGAAGATGTAAGGAAGA 1137 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1132 TTCAACCGGGAGAATGTACCGAACGGTTTACTCTTCGGTTACCGGAAGATGTGAGGAAGA 1191 Query 1138 GGATAATGAGGGAATGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1197 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 GGATAATGAAGGATTGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1251 Query 1198 GGAGTTCAAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1257 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 GGAGTTCGAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1311 Query 1258 TCCGGAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1317 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 TTCGTAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1371 Query 1318 CTACCGGTAGCGTTCGAGCCAACGCTGTACCGAATTCAACCGGTGGTGATTCGGTACGTG 1377 ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1372 CTACCGGTAGCGTTCGAGCCAGTGCTGTACCGAATTCAACCGGTAGTGATTCGGTACGTG 1431 Query 1378 CAGGAGACCGGTGGGCTTTTCTAAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1437 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1432 CAGGAGACCGGTGGGCTTTTCTTAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1491 Query 1438 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGGCCGGTG 1497 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1492 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGACCGGTG 1551 Query 1498 CAAGTGGCTCAACTAGCGGTTCGATGAGATTACCGGTTTAGTTGACTTTTCTTTTCTCAC 1557 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1552 CAAGTGGCTCAACTAGCGGTTCGGTGAGATTACCGGTTTAGTTGACTTTTCTTTTCTCA- 1610 Query 1558 ATATTTTTCGTTT-TTAT-GTTTGGGATTGTCGATATACAAGCAA-TACATTTTCAATT- 1613 | |||||| ||| || | |||||||||||| |||| | | |||| ||||||||||||| Sbjct 1611 -TCTTTTTCATTTGTTTTTGTTTGGGATTGTTGATAAATACGCAAATACATTTTCAATTT 1669 Query 1614 ---A-TT-------C-TTGTTTTGTTTAAAATT-TCTGTAACGTACATATAAAGTCAGAT 1660 | || | ||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1670 TTTAATTGAATTATCCTTGTTTTGTTTAAAATTCTCTGTAACGTACATATGAAGTCAGAT 1729 Query 1661 C 1661 | Sbjct 1730 C 1730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82077891075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5