BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477821
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05327.1 | Symbols: | Cyclin family protein | chr3:1517419-... 1402 0.0
> AT3G05327.1 | Symbols: | Cyclin family protein | chr3:1517419-1518554
REVERSE LENGTH=956
Length=956
Score = 1402 bits (759), Expect = 0.0
Identities = 898/963 (93%), Gaps = 17/963 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCTCAAAGAAAAGAATCTAAAGTGGCAAAACTTTAACaaaaaaaGCTTCAACTTT 60
|||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||
Sbjct 2 CTCTCTCTCAAAGAAAAGAATCTAAAGTAGCAAAACTTTAAC-AAAAGAGCTTCAAATTT 60
Query 61 GCTTCGCTTCTTCCATTTACACCA-CTTCCTACCTCAAGCaaaaaaaaaaaaCAACCAGA 119
|||||| ||||||||||||| | | ||||||||||||| ||||||||||| ||||
Sbjct 61 GCTTCGGACCTTCCATTTACACAAGC-TCCTACCTCAAGC----AAAAAAAACAATCAGA 115
Query 120 GAGATGATCTAAAGCTCTCTCAATCAATTCTAACACAAAAATGGAAACTTCTAGAAACTC 179
|||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 116 GAGAAGATCTAAAGCTCTCTCAAACAATTCCAACACAAAAATGGAAACTTCTAGAAACTC 175
Query 180 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCAGATCAGCCTCCTGA 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 176 CACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCTGATCAGCCTCCTGA 235
Query 240 TTCTACCCATCCTCGAGTCATAACCCTTCTCGCTTCTATCCTTGAGAAGATGATTCAGAA 299
|||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 236 TTCTACCCCTCCTCGAGTCATAACCCTTCTCGCTTCTACCCTCGAGAAGATGATTCAGAA 295
Query 300 GAACAAAAAACCATTCCACATAAGACACAACAAGGATGATGAGATCACTATGTTCCATGG 359
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 296 GAACAAAAAAAAATTCCACACAAGACACAACAAGGCTGATGAGATCACTATGTTCCATGG 355
Query 360 CTCAAAAGCACCATCGATGAA-CATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 418
|||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCAAAAGCACCATCGTT-AAGCATTTATCGTTACACAGAAAGAATCCATAGGTATGCTC 414
Query 419 AGTGTAGCCCTGCGTGCTTCGTTGCAGCTTTTGCCTACATCCTTAGGTATCTACAGAGAC 478
|||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 415 AGTGTAGCCCTGTGTGTTTCGTTGCAGCTTTTGCCTACATCCTTAGATATCTACAGAGAC 474
Query 479 CAGAGGCTACAAGTAAGGATCGTCGTCTCACATCACTCAACGTTCATCGTCTTCTCATTA 538
|||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |
Sbjct 475 CAGAGGCTACCAGTACGGCTCGTCGTCTCACATCACTCAACGTTCATCGCCTTCTCATCA 534
Query 539 CCAGTTTCTTGGTAGCAGCCAAGTTCTTGGACCGCAAGTGTTATAACAACGCATATTATG 598
||||| ||||||| ||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 535 CCAGTCTCTTGGTCGCAGCAAAATTCTTGGAACGCCAGTGTTATAACAACGCATATTATG 594
Query 599 CGAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGTTTA 658
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 CAAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGGTTG 654
Query 659 ATATTGATTTCAGACTAAACATTACAACGGAGACTTTTGAGGAACACTGTCTCATGTTGC 718
|| |||||||||| ||| | ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 655 ATGTTGATTTCAGGCTATATATTACAACGGAGACTTTCGAGAAACACTGTCTCATGTTGC 714
Query 719 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGCTCTTGGAGAGATAGCTT 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 715 AGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGTTCTTGGAGAGATAGCTT 774
Query 779 GTAGCTGCCAAGCGATTTGATATAACAAAACTCAAAAGA-GGGGaaaaaaaGCCATTGGT 837
|||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||
Sbjct 775 GTAGCTGCCAAGCGATTTGATATAGCAAAACTCAAAAGACGGGGAAAAAAA-C-ATTGGT 832
Query 838 TAGATCTTCTTTTCTTCAGTTTATTGTCAAACTAAT---GTGTTTTGTCATGAGCA-A-G 892
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 833 TAGATCTTATTTTCTTCAGTTTATTGTCAAACTAATTATGTGTTTTGTCATGAGCACAAG 892
Query 893 AACTAAAATCTAATTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AACTAAAATATATTTAAGTTTGGAATCTAAACAATTCTTTTCTTATTGCTCAAGTAATTT 952
Query 953 CTG 955
|||
Sbjct 953 CTG 955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5