BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477839 Length=1009 Score E Sequences producing significant alignments: (Bits) Value AT3G05500.1 | Symbols: | Rubber elongation factor protein (REF... 1685 0.0 > AT3G05500.1 | Symbols: | Rubber elongation factor protein (REF) | chr3:1593434-1595015 FORWARD LENGTH=1060 Length=1060 Score = 1685 bits (912), Expect = 0.0 Identities = 980/1012 (97%), Gaps = 7/1012 (1%) Strand=Plus/Plus Query 1 ATCACCATTGCTTTGTTTTGTTCGTCaaa-aaaaTCAATTTTAAATTTCTTCTCTTCTTC 59 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || Sbjct 1 ATCACCATTGCTTTGTTTTGTTCGTCAAATATAATCAATTTTAAATTTCTTCTCTTC-TC 59 Query 60 TTCAAACGAATCGCC-TTTTCGATAATCTCTTTGCATCGA-TTCGATCATGGCTACTCAA 117 ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 60 TTCAAACGAATCGCCTTTTTCGATAATCTCTTTGCATCGATTTC-ATCATGGCTACTCAA 118 Query 118 ACGGATCTCGCTCAGCCCAAACTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAC 177 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 119 ACGGATCTCGCTCAGCCCAAGCTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAT 178 Query 178 TTGCAATTCGTGCAAGCTGCTGCTGTTGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 237 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 179 TTGCAATTCGTGCAAGCTGCTGCTGTGGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 238 Query 238 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 298 Query 298 AAGACCGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 357 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AAGACTGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 358 Query 358 TACATGGACCAGAAGGTTGATATGTCTGTGACCGAGCTTGACCGTCGTGTCCCACCAGTT 417 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 359 TACATGGACCAGAAGGTTGATATGTCTGTGACTGAGCTTGACCGTCGTGTCCCACCAGTC 418 Query 418 GTCAAGCAAGTGTCTGCCCAAGCCATCTCAGCTGCTCAGATAGCACCCATTGTGGCCCGT 477 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 419 GTCAAGCAAGTGTCTGCCCAAGCCATCTCCGCTGCTCAGATAGCACCCATTGTGGCACGT 478 Query 478 GCGTTGGCCTCTGAGGTGCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 537 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GCGTTGGCCTCTGAGGTTCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 538 Query 538 TCCGTCTACACCAAGTACGAACCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 597 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 539 TCCGTCTACTCCAAGTACGAGCCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 598 Query 598 GCAGAGCAATGTGCTGTTTCAGCTTGGAAGAAGCTGAACCAGCTTCCTCTGTTCCCAAGG 657 |||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 599 GCAGAGCAGTGTGCCGTTTCAGCTTGGAAGAAGCTTAACCAGCTTCCTCTATTCCCAAGG 658 Query 658 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 718 Query 718 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 778 Query 778 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGAACGAGCCTTTGGAGTTCCATCCA 837 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 779 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGACCGAGCCTTTGGAGTTCCATCCA 838 Query 838 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTATGGTTTTGTTGGGATTATGGTGAAC 897 |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| Sbjct 839 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTTTTGTTTTGTTGGGATTAAGGTGAAC 898 Query 898 CGGATCTTGGTTAGCGATTGATCCCTGGTTCTCGTTCTTTTGttttttttCATCATGAAC 957 ||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||| Sbjct 899 CGGATCTTGGTTAGCGATTGATCTCTGGTTCTCGTTCTTTT-TTTTCTTTG-TCATGAAC 956 Query 958 TTTCGTTGTTTCGTTTAATAATCAAAAGTTGTATAATTTAAGTTTGGGATTA 1009 ||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 957 TTTTGTTGTTTCGTTTAATAATCAAAAGTTGTATAATCTAAGTTTGGGATTA 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49430400648 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5