BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477844 Length=1859 Score E Sequences producing significant alignments: (Bits) Value AT3G05545.1 | Symbols: | RING/U-box superfamily protein | chr3... 2904 0.0 > AT3G05545.1 | Symbols: | RING/U-box superfamily protein | chr3:1609211-1612523 FORWARD LENGTH=1893 Length=1893 Score = 2904 bits (1572), Expect = 0.0 Identities = 1772/1863 (95%), Gaps = 35/1863 (2%) Strand=Plus/Plus Query 11 tttt-tt-ttCCTGGGTCTCTCTCTGGTGTGGTGACGATCGAAGAGAGTTCACGGATTCA 68 |||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 22 TTTTCTTCTTCCTGGGTCTCTCTCT-G-GTGGTGACGATCGAAGAGAGTTCACGGATTCG 79 Query 69 TAGTAGGATTAAATAAATCATTCTGGTAATTTAATCGAAGCGTAAGGAATTCGGGAGAGT 128 || |||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||| Sbjct 80 TACAAGGATTAAATTAATTATTCTGGTAAATTAATCGAAGCGTAAGGAATTGGGGAGAGT 139 Query 129 GA-TTTT-TGGGTTCGAATTTTTGTGGTTGATTCaaaaaaaaaGAAGGGTTTTGAGATTT 186 || |||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||| Sbjct 140 GATTTTTCTGGGTTCGAA-TTTGGTGGTTGATTCAAAAAAAAAAAAGGGTTTTGAGATTT 198 Query 187 GGGTTGTTTTGATTTCG-ATTTTGGTTATGGGTTTAGGTAATAAGGGTAACAAATTCAAT 245 ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 199 GGGTTATTTTGATTTCGAATTTTGGTTATGGGTTTAGGCAATAAGGGTAACAAATTCAAT 258 Query 246 TTCGGCGATAATGATCTCGCCGACGAAGGTAGTGCTGCCGATGGCGATTCTCGCGACGAA 305 |||||||||||||||||||||||||||| ||||| ||||||| | |||||||| Sbjct 259 TTCGGCGATAATGATCTCGCCGACGAAGCTAGTGGTGCCGAT---G------GCGACGAA 309 Query 306 GGTGATGGTTTTGGTTCTGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 365 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GGTGATGGTTTTGGTTCGGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 369 Query 366 GATCGAGCTTGGGCTAATCTTCAATGTGACCATCAGTTCCATCTTGATTGTATTGGTTCT 425 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 370 GATCGAGCATGGGCTAATCTTCAATGTGACCATCAGTTCCATCTAGATTGTATTGGTTCG 429 Query 426 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 489 Query 486 TGGCTTTATGCAAATGGTTGCCGTACATATCCTGAATTCAGTGTCGAGGATTGGGTTCAC 545 |||||||||||||| ||||| ||| ||||||| ||||||| ||||||||||||||||||| Sbjct 490 TGGCTTTATGCAAACGGTTGTCGTTCATATCCCGAATTCAATGTCGAGGATTGGGTTCAC 549 Query 546 GAAGAAGATATTTATGATATTGGAGCATACTCTGAATTGTCTTTTGGAGTTCACTGGTGC 605 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 550 GAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGTCTTTTGGAGTTCACTGGTGC 609 Query 606 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCGCCGAGTTCA 665 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 610 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCACCGAGTTCA 669 Query 666 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACTGCAGGT 725 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 670 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGT 729 Query 726 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCATTCGTCTTCCTCAAGCAGTGGT 785 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 730 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTCGCCTTCCTCAAGCAGTGGT 789 Query 786 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 849 Query 846 GTTTCTGGTGAAGTCCCAACTCCATATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 905 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 850 GTTTCTGGTGAAGTCCCAACTCCTTATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 909 Query 906 GATTATCACCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCCCTCATGTG 965 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 910 GATTATCATCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCGCTCATGTG 969 Query 966 GGTAGTCCAACTCAGCCCACGCCTCCACCAGCTGCTGCGAGGACTTCTCGAGCCAACGGT 1025 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 970 GGCAGTCCAACTCAGCCCACGCCTCCACCAGCCGCTGCGAGGACTTCTCGAGCCAACGGC 1029 Query 1026 TCAGATGTGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1085 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030 TCAGATATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1089 Query 1086 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1149 Query 1146 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCGTATTACCAACAGTCTTCTGCA 1205 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1150 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCCTATTACCAACAGTCTTCTGCA 1209 Query 1206 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGACCTGTATTCCCGTCTGGCCGG 1265 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1210 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGGCCTGTATTCCCATCTGGCCGG 1269 Query 1266 AGGCCCGCTAGAGGAATAGCTTCCGGGATGGGATCAACATCATCTTCTTCGGATCAGGCA 1325 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 1270 AGGCCCGCTAGAGGAATAGCTTCAGGGATGGGATCAACGTCATCTTCTTCAGATCAGGCA 1329 Query 1326 GGCGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1385 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330 GGTGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1389 Query 1386 CAAGCCTACTCGATTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAC 1445 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1390 CAAGCCTACTCGGTTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAT 1449 Query 1446 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCGTAAGAACTG 1505 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1450 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCTTAAGAACTG 1509 Query 1506 AGTCAGTACCCGT-CGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACACAAATCaa 1564 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1510 AGTCAGTACCCGTTCGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACA-AAA--AA 1566 Query 1565 aaaaagaaaaaaaaaaaaaaaCATTGGGAATTTGATATTTGAGAAAACCTGAAAA-CTGC 1623 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1567 CCAAA-AAAAGAAAAAAAAAACATTGGGAATTTGATATTTGAGAAAACCTGAAAAACTGC 1625 Query 1624 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1683 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1626 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1685 Query 1684 GAGAGAGACTGCCTCCCCCGCGTTGGTGGTGTGACC---GTGCGGTTCGAGGTCTGGTT- 1739 ||||||||||||||||||| || |||||||||||| |||||||||||||||||| | Sbjct 1686 GAGAGAGACTGCCTCCCCCA-GTCGGTGGTGTGACCCCCGTGCGGTTCGAGGTCTGGGTA 1744 Query 1740 TGAATCGGGGGAGCGAAAGAGGTCGTTGGGTATTTGTTTTTTAATGTGGCGACAATGGGT 1799 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1745 TGAATCGGGGGAGCGAAAGAGGTCTTTGGGTATTTGTTTTTTAATGTGGCGACATTGGGT 1804 Query 1800 ATCAAAGTGATGAAGTACCCTAATGAAACTTT-TTTC--CTATCTGGTTTTGTTAAATTC 1856 ||| |||| || ||||||||||||||||| |||| |||||||||| ||||||||| Sbjct 1805 ATCCAAGTTAT----TACCCTAATGAAACTTTCTTTCTTCTATCTGGTTATGTTAAATTT 1860 Query 1857 TAA 1859 ||| Sbjct 1861 TAA 1863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92017598985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5