BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477853
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05625.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1452 0.0
> AT3G05625.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1632284-1634139 FORWARD LENGTH=1125
Length=1125
Score = 1452 bits (786), Expect = 0.0
Identities = 880/926 (95%), Gaps = 4/926 (0%)
Strand=Plus/Plus
Query 1 GTTTCTTCCCTCCCATTTGTCATCTTATCTTCTGCAATTACTGGTAAAGTGAGCAATCCG 60
||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1 GTTCCTTCCCTCCCATTTGTCATCTTATCTTCTGCGATTACTGGTAAAGTGAGAAATCCG 60
Query 61 TTAATCCCTAGAGAAACTGTAATCGTCTCGTTGATTCATAGAAATTCTTCTGGC-TCCGC 119
||||||||||||||||||||||||||| || |||||| |||||||||||| || |||||
Sbjct 61 TTAATCCCTAGAGAAACTGTAATCGTCGCGGTGATTCGGAGAAATTCTTCT-GCTTCCGC 119
Query 120 GGAAAATGTCACTAACCCAGATCGTGAATCCAATCATATATCCATCTCGCACAATTCCAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGAAAATGTCACTAACCCAGATCGTGAATCCAATCATATATCCATCTCGCACAATTCCAC 179
Query 180 GGCGTTTCATGGCGATTTCACCTTTTAAAACCCTAAACCCCCAATTTTCCCGCCACCCAC 239
||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GGCGTTTCACGGCGATCTCGCCTTTTAAAACCCTAAGTCCCCAATTTTCCCGCCACCCAC 239
Query 240 CTCACGCACTATCTCGGAGACGCTTTCTTCCTTCTGTTTCCTCGATATGGGATGCCATAA 299
|||||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 240 CTCACGCACTGTCTCGTAGACTCTTCCTTCCTTCTGTTTCCTCTATATGGGATGCCATAA 299
Query 300 CCGGAGGTGGAGACTCGAACCCCCGTGAGGCCATCGCAGCGGTTCGACGCGGAATGCAGC 359
|||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 CCGGCGGCGGAGATTCGAACCCTCGTGAGGCCATCGCAGCGGTTCGACGCGGAATGCAGC 359
Query 360 TCTTCAGACAGGGTGATGTTGCTGGATCGGTGGCAGAGTTCGATAGAGCAATCGTTTTGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 TCTTCAGACAGGGTGATGTTGCTGGATCGGTGGCAGAGTTCGATAGAGCAATCATTTTGG 419
Query 420 ATCCCAGGCAAAAGGCATATCTTTGGCAACGCGGGCTTTCTCTTTACTATATAGATAGGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 ATCCCAGGCAAAAGGCATATCTTTGGCAACGCGGGCTTTCTCTTTACTATGTAGATAGGT 479
Query 480 TTGAAGAAGGCGCAGAGCAGTTCCGGATAGATGTTGCTCAGAACCCAAATGACACAGAGG 539
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 480 TTGAAGAAGGTGCAGAGCAGTTCCGGATAGATGTTGCTCAGAATCCTAATGACACAGAGG 539
Query 540 AGTCCATTTGGTGCTTTATCTGCGAGGCTCGGCTCCACGGTGTTGATGTTGCACGAAAAC 599
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 540 AGTCCATTTGGTGCTTTATCTGCGAGGCGAGGCTCCATGGTGTTGATGTTGCACGAACAC 599
Query 600 AGTTTCTCGAGGTTGGTAGAGATTCTCGGCCCGTGATGCGGGAAGCTTATAATCTATTCA 659
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 600 AGTTTCTCGAGGTTGGTAGAGATTCTCGGCCTGTGATGCGAGAAGCTTATAATCTATTCA 659
Query 660 AGAATGGTGGTGATCCTGAAAAGTTAGTTAATGACTTCT-TGAGCGGTCAAGCAAGCGAA 718
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 660 AGAATGGTGGTGATCCTGAAAAGTTAGTAAATGACTTCTCT-AGCGGTCAAGCAAGCGAA 718
Query 719 TACTTCTACGCTTCGCTGTACGCAGGGCTCTACTATGAAGCTGAGGGTAAATCAGAAAAC 778
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TACTTCTATGCTTCTCTGTACGCAGGGCTCTACTATGAAGCTGAGGGTAAATCAGAAAAC 778
Query 779 GCAAAGTTTCATATAACCGCGGCTAGTGGATCTCCATATGGGCAGAGGTCTGAAGATTAT 838
|||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 779 GCAAAGTTTCATTTAACCGCGGCTTGTGGATCTCCATATGGGCAGAGGTCTGATGATTAT 838
Query 839 ATGGCTTCACTTGCTAAAGTTCACTGCCTTTGTAGAAACTGGAGCTCCGGTATTGTTTGA 898
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 839 ATGGCTTCACTTGCTAAAGTCCATTGCCTTTGTAGAAACTGGAGCTCCGGTATTCTTTGA 898
Query 899 ACCTGTTCATGGTTTTGTGGAGCCAA 924
||| ||||||||||||||||||||||
Sbjct 899 ACCGGTTCATGGTTTTGTGGAGCCAA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5