BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477856
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05640.1 | Symbols: | Protein phosphatase 2C family protein... 1888 0.0
AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein... 761 0.0
> AT3G05640.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:1640393-1643253 REVERSE LENGTH=1737
Length=1737
Score = 1888 bits (1022), Expect = 0.0
Identities = 1194/1277 (94%), Gaps = 12/1277 (1%)
Strand=Plus/Plus
Query 208 TCTATCTGAGTTCAAGATCATATGATATTTTCACCTTCTGGACAAAATGGGACATTTCTC 267
||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 399 TCTCTCT-AGTTCAAGATCATATGATATTTTCACTTTCTGGACAAAATGGGACATTTCTC 457
Query 268 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCCAAG-A-A-CAACAA 324
||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||
Sbjct 458 TTCCATGTTCAACGGTATAGCTAGATCCTTCTCGATCAAGAAAGCGAAGAACATCAACAG 517
Query 325 CAGCAAAAGCTACGCGAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAAAAGGA 384
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 518 CAGCAAAAGCTACGCTAAGGAAGCCACAGATGAAATGGCGAGAGAGGCGAAGAAGAAGGA 577
Query 385 A-TTGATTCTGAGATCCTCTGGTTGCATTAATGCAGATGGTTCTAATAACTTGGCTTCTG 443
| || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 578 ACTT-ATTTTGAGATCCTCTGGTTGCATTAATGCAGATGGATCTAATAACTTGGCTTCTG 636
Query 444 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTCTGCCATCGTCTGGGAGGGAT 503
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 637 TTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTGTGCCATCGTCTGGGAGGGAT 696
Query 504 TTGGATGTCAAGAAGACATGATCTTCTGTGGGATATTTGATGGACACGGTCCCTGGGGAC 563
||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 697 ATGGGTGTCAAGAAGACATGATATTCTGTGGGATATTCGATGGACATGGTCCCTGGGGAC 756
Query 564 ACTTTGTTTCTAAACAAGTCAGGAACTCAATGCCTCTATCTTTGCTCTGCAACTGGAAAC 623
|||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||
Sbjct 757 ACTTTGTTTCTAAACAAGTCAGAAACTCAATGCCTATATCTTTGCTCTGTAACTGGAAAG 816
Query 624 AGACTCTTTCTCAGACCACATTAGCAGAGCCCGATAAAAAGCTACAGCGGTTCGCCATCT 683
|||||||||||||||||||| ||||||| ||||||||| ||||||||||||| || ||||
Sbjct 817 AGACTCTTTCTCAGACCACAATAGCAGAACCCGATAAAGAGCTACAGCGGTTTGCAATCT 876
Query 684 GGAAATACTCATACCTCAAAACATGTGAAGCTGTCGATCGGGAGCTTGAGCATCACCGAA 743
|||||||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 877 GGAAATACTCATTCCTCAAAACCTGTGAAGCTGTTGATCTGGAGCTTGAGCATCACCGAA 936
Query 744 AGATCGATTCTTTCAACAGCGGTACGACTGCTCTAACCGTTGTGAGACAGGGTGATGTTA 803
|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 937 AGATAGATTCTTTCAACAGCGGTACGACCGCTCTAACCATTGTGAGACAGGGTGATGTTA 996
Query 804 TTTATATAGCAAACGTTGGGGATTCACGCGCAGTATTAGCCACGGTTTCAGACGAAGGAA 863
|||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 997 TTTATATAGCAAACGTCGGGGATTCACGTGCGGTATTGGCCACAGTTTCAGACGAAGGAA 1056
Query 864 GCTTGGTTGCGGTTCAGCTCACTGTAGATTTCAAACCAAACCTGCCGCAGGAGGAAGAGC 923
||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1057 GCTTGGTCGCGGTTCAGCTCACCGTAGATTTCAAGCCAAACCTGCCTCAGGAGGAAGAGC 1116
Query 924 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAGGACGAGCCAGGGGTCCACCGTG 983
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1117 GGATAATCGGATGCAACGGGAGAGTATTTTGCCTTCAAGATGAGCCAGGGGTCCACCGTG 1176
Query 984 TGTGGCAACCAGAAGAGGAATCTCCAGGACTCGCAATGTCAAGAGCATTCGGAGACTATT 1043
| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 1177 TATGGCAACCAGTAGATGAATCTCCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTATT 1236
Query 1044 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GTATCAAAGATTACGGATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTA 1296
Query 1104 GAGACCAGTTTATAATCTTAGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1163
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GAGACCAGTTTATAATCTTGGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGG 1356
Query 1164 CCATAGCTATTGTTTCGTCGACCGCAGAGCGGCCAAAGGCTGCCAAACGACTGGTACAGC 1223
|||||| ||||||||| ||||| || |||||| |||| |||||||| |||||||||||||
Sbjct 1357 CCATAGATATTGTTTCCTCGACGGCGGAGCGGGCAAAAGCTGCCAAGCGACTGGTACAGC 1416
Query 1224 AAGCGGTTAGAGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1283
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 AAGCAGTTAGGGCTTGGAATAGAAAGAGACGCGGAATCGCCATGGATGATATCTCTGCCG 1476
Query 1284 TGTGCCTCTTTTTCCATTCCTCATCTTCGTCGCCATCACTATAGCAACATCTTCACCATG 1343
|||||||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||
Sbjct 1477 TGTGCCTCTTCTTCCATTCTTCATCGTCGTCGCCATCTCTATAGCAACATCTTCTCCATG 1536
Query 1344 CCACGACTTGAAACTTGTAAGTAGGTACTAGTTTTGGACCGGTG-AAGAAAAGGAAAAAT 1402
||||||| || || ||| ||| || || ||||||||||| | |||||||| ||||||
Sbjct 1537 CCACGACCTGCAA---GTAGGTAC-TAGTACTTTTGGACCGG-GCAAGAAAAGAAAAAAT 1591
Query 1403 GCTGCAATGTAAATAGACTTGCGTAAACTCGCATTGAATATTACTTTCTTGCCAAACCAG 1462
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1592 GCTGCAATGTAGATAGACTTGCGTAAAATCGCATTGAATATTACTTTCTTGCCAAACCAG 1651
Query 1463 AGTCCTATAACAATCTA 1479
|||||||| ||||||||
Sbjct 1652 AGTCCTATCACAATCTA 1668
Score = 235 bits (127), Expect = 8e-61
Identities = 200/232 (86%), Gaps = 18/232 (8%)
Strand=Plus/Plus
Query 1 CATAAATAAATAAAAGTAGAGAAATATCTAATTTTGTTTCTTCCCTGTGT-T---TGCCG 56
|||||||||||||| ||||||||||||||| |||| ||||||||||||| | |||
Sbjct 134 CATAAATAAATAAATTTAGAGAAATATCTAAGTTTGGTTCTTCCCTGTGTCTACCCACCG 193
Query 57 -GA--ATCATTAAATGGATTGTGATTTCTGATTTGTGAGTCAATCTTTCTCTACTCCATT 113
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 194 TGATCATCATAAAATGGATTGTGATTTCTGATTTGTGAGTCTATCTTTCTCTACTCCATT 253
Query 114 AGTTTCCTCTCCGTTTGGGT-ATTACGTCACTTTCTCCGAGCTTACGTCATCTATGTCCG 172
|| ||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 254 AGCTTCCTCTCC-CTTGGATGGTTACGTCACTTTCTCCGAGCTTACGTCATCTATATCCG 312
Query 173 GTCGTCACTTCTTTTTCCTT--A-------GCAGCATTGCGTAATCTATCTG 215
||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 313 GTCTTCACTTCTTTTTCCTTCCATTCCTCAGCAGCATTGCGTAATCTATCTG 364
> AT5G27930.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:9958098-9960339 REVERSE LENGTH=1343
Length=1343
Score = 761 bits (412), Expect = 0.0
Identities = 894/1122 (80%), Gaps = 52/1122 (5%)
Strand=Plus/Plus
Query 251 AAA-ATGGGACATTTCTCTTCCATGTTCAACGGTA-TAGCTAGATCCTTCTCGATCAAGA 308
||| |||||||||||||| || |||||||| || | ||||| |||| || || || ||||
Sbjct 117 AAAGATGGGACATTTCTCATCGATGTTCAATGG-ATTAGCTCGATCATTTTCTATAAAGA 175
Query 309 AAGCCAAGAACAACAACAGCAAA-AGCTACGCGAAGGAAGCCACAGATGAAATGGCGAGA 367
||| ||||||||||| | ||| || |||| |||||||| | ||||| ||||| ||
Sbjct 176 AAGTGAAGAACAACAA-TGGAAACTGCGACGCAAAGGAAGCTGCTGATGAGATGGCAAGC 234
Query 368 GAGGCGAAGAAAAAGGAATTGATTCTGAGATCCTCTGGTTGCATTAATGCAGATGGTTCT 427
||||| |||||||| ||||||||||||| ||||||||||| |||||| | | || |||
Sbjct 235 GAGGCTAAGAAAAAAGAATTGATTCTGAAATCCTCTGGTTATGTTAATGTACAAGGATCT 294
Query 428 AATAACTTGGCTTCTGTTTTCTCTAGACGCGGTGAGAAAGGCGTTAATCAGGACTCTGCC 487
||||| || || ||| ||||||| | |||||| || ||||||||||||||||| | || |
Sbjct 295 AATAATTTAGCCTCTCTTTTCTCCAAACGCGGCGAAAAAGGCGTTAATCAGGATTGTG-C 353
Query 488 A-TCGTCTGGGAGGGATTTGGATGTCAAGAAGACATGATCTTCTGTGGGATATTTGATGG 546
| |||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||
Sbjct 354 ACTCGTTTGGGAGGGATTTGGGTGCCAAGAAGACATGATCTTCTGCGGGATATTCGATGG 413
Query 547 ACACGGTCCCTGGGGACACTTTGTTTCTAAACAAGTCAGGAACTCAATGCCTCTATC-TT 605
||||||||| ||||| |||| ||| | |||||||| || |||||||||||| | || |
Sbjct 414 ACACGGTCCATGGGGTCACTATGTAGCCAAACAAGTAAGAAACTCAATGCCTTTGTCGCT 473
Query 606 TGCTCTGCAACTGG-AAACAGACTCTTTCTCAGACCACAT-TAG----C-AG--AG-CC- 654
| || ||||||||| ||| ||| |||| ||||| |||| | ||| | || | ||
Sbjct 474 T-CTTTGCAACTGGCAAA-AGATTCTTGCTCAGGCCAC-TCTAGAACCCGAGCTCGACCT 530
Query 655 C----G-----AT--AAAAAGCTACAGCGGTTCGCCATCTGGAAATACTCATACCTCAAA 703
| | || ||||| || || | |||| ||| ||||| | || || || |||
Sbjct 531 CGAAGGCTCTAATAAAAAAATCT-CA-AGATTCGACATATGGAAGCAATCCTATCTAAAA 588
Query 704 ACATGTG-AAGCTGTCGATCGGGAGCTTGAGCATCACCGAAAGATCGATTCTTTCAACAG 762
|| |||| || | || |||| |||||||| |||||||| ||||||||||||| | | ||
Sbjct 589 ACGTGTGCAA-CGGTTGATCAAGAGCTTGAACATCACCGCAAGATCGATTCTTACTATAG 647
Query 763 CGGTACGACTGCTCTAACCGTTGTGAGACAGGGTGATGTTATTTATATAGCAAACGTTGG 822
||| || || ||||||||| |||||||||||||||| ||||||||| ||||||| || ||
Sbjct 648 CGGCACAACAGCTCTAACCATTGTGAGACAGGGTGAAGTTATTTATGTAGCAAATGTAGG 707
Query 823 GGATTCACGCGCAGTATTAGCCACGGTTTCAGACGAAGGAAGCTTGGTTGCGGTTCAGCT 882
|||||| | || ||| |||||| || || || || |||||||||||||||||||||||
Sbjct 708 CGATTCAAGAGCGGTACTAGCCATGGAGTCGGATGAGGGAAGCTTGGTTGCGGTTCAGCT 767
Query 883 CACTGTAGATTTCAAACCAAACCTGCCGCAGGAGGAA-GAGCGGATAATCGGATGCAACG 941
||| | ||||||||||| || || || ||||| ||| ||||||||||| || ||||| |
Sbjct 768 CACCCTCGATTTCAAACCGAATCTACCACAGGA-GAAGGAGCGGATAATTGGCTGCAAAG 826
Query 942 GGAGAGTATTT-TGCCTTCAGGACGAGCCAGGG-GTCCACCGTGTGTGGCAACCAGAAG- 998
|| | || ||| || || | || ||||| ||| ||||| ||||||||||| ||||| |
Sbjct 827 GGCGGGT-TTTCTGTCTAGATGATGAGCC-GGGAGTCCATCGTGTGTGGCAGCCAGACGC 884
Query 999 AGGAATCTCCAGGACTCGCAATGTCAAGAGCATTCGGAGACTATTGTATCAAAGATTACG 1058
| ||| | || || ||||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 885 A-GAAACACCGGGGCTCGCAATGTCAAGAGCATTCGGAGACTACTGTATTAAAGAGTATG 943
Query 1059 GATTGGTCTCAGTGCCTGAAGTCACTCAGAGGCATATATCCATTAGAGACCAGTTTATAA 1118
||||||||||||| |||||||||||||| || || || || | || |||||| || ||||
Sbjct 944 GATTGGTCTCAGTCCCTGAAGTCACTCAAAGACACATCTCTACTAAAGACCACTTCATAA 1003
Query 1119 TCTTAGCCACTGATGGGGTATGGGATGTGATATCAAACCAAGAGGCCATAGCTATTGTTT 1178
|||| |||| ||||||| ||||||||||||| || ||||||||||| |||| ||||| |
Sbjct 1004 TCTTGGCCAGTGATGGGATATGGGATGTGATCTCTAACCAAGAGGCTATAGAGATTGTCT 1063
Query 1179 CGTCGACCGCAGAGCGGCCAAAGGCTGCCAAACGACTGGTACAGCAAGCGGTTAGAGCTT 1238
| || || || |||||||| ||||| || || ||| | ||| ||||||||||| | ||||
Sbjct 1064 CCTCAACGGCTGAGCGGCCTAAGGCGGCTAAGCGATTAGTAGAGCAAGCGGTTCGGGCTT 1123
Query 1239 GGAATAGAAAGAGACGCGGA-ATCGCCATGGATGATATCTCTGCCGTGTGCCTCTTTTTC 1297
|||| | ||||||||| ||| | | ||||||||||||| || | ||| |||||||| ||
Sbjct 1124 GGAAGAAAAAGAGACGAGGATA-CTCCATGGATGATATGTCAGTCGTCTGCCTCTTCCTC 1182
Query 1298 CATTCCTCATCTTCGTCGCCATCACTAT-AGCAACATCTTCA 1338
||||| | ||||| ||| |||| |||| | ||||||| |||
Sbjct 1183 CATTC-T--TCTTCATCGTCATCTCTATCA-CAACATCATCA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5