BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477862 Length=1462 Score E Sequences producing significant alignments: (Bits) Value AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear f... 2289 0.0 > AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear factor Y, subunit A2 | chr3:1676546-1678932 REVERSE LENGTH=1464 Length=1464 Score = 2289 bits (1239), Expect = 0.0 Identities = 1398/1472 (95%), Gaps = 22/1472 (1%) Strand=Plus/Plus Query 2 TACTCATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGATATGGCTTCCTAACA 61 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4 TACTAATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGAGATGGCTTCCTAACA 63 Query 62 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCGCTTCTCTACTCTCTACTCTAT 121 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 64 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCTCTTCTCTACTCTCTACTC--T 121 Query 122 CATCACTCCATCTGTGAGGAACAAATCTTTCTTCTTC-TC-A-GCAATATCCACTTTTCA 178 |||||||||||||| ||||| ||||||||| ||| || | ||| |||| | |||||| Sbjct 122 -ATCACTCCATCTGT---GAACATATCTTTCTTATTCTTCTAGGCACTATCTATTTTTCA 177 Query 179 C-TTTTGT-ATCGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 236 | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 CTTTTTGTAATTGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 237 Query 237 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCC 296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCG 297 Query 297 CCGGCGATTCTGACTCGTTCGCCAGTGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAG 356 |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| Sbjct 298 CCGGCGATTCTGACTCATTCGCCGGAGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAC 357 Query 357 GTGTGGATAAACAGAGCAACTCTGCAACTCACTTAGCTTTCTCACTTGGTGATGTAAAGA 416 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 358 GTGTGGATAAACAGAGCAACTCTGCAACGCACTTAGCTTTCTCACTTGGTGATGTAAAGA 417 Query 417 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCATTGCAATCGCCTTGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 418 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTGG 477 Query 477 AACTTGGATTTACTCAGCCACCGATCTACACAAAGTATCCTTATGGGGAACCACAGTATT 536 ||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||| || | Sbjct 478 AACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCTATGGAGAACAACAATACT 537 Query 537 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAACCATGGAAA 596 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 538 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAAACATGGAAA 597 Query 597 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGCGACGCC 656 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 598 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGAGACGCC 657 Query 657 AGTCCCGTGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGCAGATGCCGCA 716 | ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 658 AATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGTAGATGCCGCA 717 Query 717 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 777 Query 777 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAAAAGCGGAACCAATGCAAAGAAAG 836 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 778 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAATAGCGGAACCAATGCAAAGAAAG 837 Query 837 CTGACGGAAGTATGCAGATCCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 896 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 838 GTGATGGAAGTATGCAGATTCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 897 Query 897 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAATGGATTAAATGTGTCGG 956 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 898 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAACGGATTAAATGTGTCGG 957 Query 957 GATCAGAAGTTACAAGCATGAACTACTTCCTAAGTTCTCCAGTCCATTCTCTTGGTGGCA 1016 ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| Sbjct 958 GATCAGAAGTTACTAGCATGAACTACTTCCTAAGTTCTCCCGTTCATTCTCTTGGTGGCA 1017 Query 1017 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGGAATGGATAATGGCTGCCGCAATT 1076 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 1018 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGCAATGGATAATGGCTGCTGCAATT 1077 Query 1077 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1137 Query 1137 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTAGCTGTGAACAGGCAAATCATCTT 1196 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1138 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTGGCTGTGAACAGGCAAATCATCTT 1197 Query 1197 TGGCTCATTCTCTATTAAGGTCACTTCACTGTCAGGTGAAAAAA-CTTTGAT-TA---AT 1251 ||||||||||||||||||||| ||||| | || ||||||||||| ||||||| || || Sbjct 1198 TGGCTCATTCTCTATTAAGGTAACTTCGCCGTGAGGTGAAAAAAGCTTTGATATATTTAT 1257 Query 1252 CTTCTGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGGGTTTGGTCACTAAACCC 1311 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1258 CTTCAGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGTGTTTGGTCACTAAACCC 1317 Query 1312 ACTTGCTCCAACTAGTAgtgtgtgtgtgtgtTAAGAAAACTCTGTTATCTGATTTTTGTA 1371 ||||| ||||||||||||||||||| | | | |||||||||||||||||||||||| ||| Sbjct 1318 ACTTGTTCCAACTAGTAGTGTGTGT-T-T-T-AAGAAAACTCTGTTATCTGATTTT-GTA 1372 Query 1372 GCTCTCTCTGTCTCTGTGTGTTTCTCAAACAACTGTAAGAA-TTTTAAGTTATGTGGCTT 1430 |||||||||| || |||||||||||||||||||||||| || ||||||||||||||| || Sbjct 1373 GCTCTCTCTGGCTTTGTGTGTTTCTCAAACAACTGTAACAACTTTTAAGTTATGTGGTTT 1432 Query 1431 ATGTAACATATTTAAGACGTGTGTTTTTGTAT 1462 |||||||||||||||||| ||||||||||||| Sbjct 1433 ATGTAACATATTTAAGACCTGTGTTTTTGTAT 1464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72087982620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5