BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477924
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887043-1... 2300 0.0
> AT3G06240.1 | Symbols: | F-box family protein | chr3:1887043-1888750
FORWARD LENGTH=1708
Length=1708
Score = 2300 bits (1245), Expect = 0.0
Identities = 1465/1571 (93%), Gaps = 16/1571 (1%)
Strand=Plus/Plus
Query 55 TTATATCTAATAATTAATTTAAAGAGAAAATTTACAAAAGTTTATTAGAGCAAATAACTC 114
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 74 TTATATCTAATAATTAATTTAAAGAGAAAATTTATAAAAGTTTATTAGAGCAAATAACTC 133
Query 115 AAACTC---TTTTATAGTCGTTATCACCCGGTTTGACTATAT-AACCGTTTAACCGGGAA 170
|||||| ||||||||||||||| ||||||||||||||| | ||||||||||||| |||
Sbjct 134 AAACTCGGATTTTATAGTCGTTATGACCCGGTTTGACTAT-TGAACCGTTTAACCGAGAA 192
Query 171 ATTGGGATTGAATTAAGACAACCGAAATTAGACCCGGATCCAGTGTTACCGGGCTAAATT 230
||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct 193 ATTGGGACTCAATTAAGACAACCGAAACTAGACCCGGATCCAGTGTTAGCGGGCTAGATT 252
Query 231 AAGGTGTCGGGTCATAGCAGAGAAGCTGCCAGACGCTAACGATCGAATGGATGCGATCCA 290
|||||||||||||||||| ||||||| |||||||| ||| || ||| | ||||||||
Sbjct 253 AAGGTGTCGGGTCATAGCGGAGAAGCAACCAGACGCCAACAAT-GAA---A-GCGATCCA 307
Query 291 GTTGCTGTGGGAAGCGATAATGAAAGCGACGAAGAAAGAAAGACGGAGAGAAGATGACGA 350
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 308 GTTGCTGTGGGAAGCGATAATGGAGGCGACGAAGAGAGAAAGACGGAGAGAAGATGACGA 367
Query 351 CGGCGAAGAAGCTTCAACGGAATCACTCGTCCTTCCTCCAGAGATCATTACAGAAATTCT 410
||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 368 CGGCGAAAAAGCTTCACCGGAATCACTCGTTCTTCCACCAGAGATCATTACAGAAATTCT 427
Query 411 TCTCCGATTACCGGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTATTTTACTC 470
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 428 TCTCCGATTACCAGCCAAATCGATCGGGCGATTCAGGTGCGTATCAAAGCTCTTTTGCAC 487
Query 471 TCTGTCTTCGGATCCAGGATTCGCGAAGAATCACCTCGATCTGATCCTTCGAAACGACGC 530
| | || || |||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 488 TTTATCGTCAGATCCAGGGTTCGCGAAGATTCACCTCGATCTGATCCTTCGAAACGAATC 547
Query 531 CGTAAGATCGCTCCACCGTAAGCTCATCGTGTCTTCACATAATCTATACTCTTTAGATTT 590
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 548 CGTAAGATCGCTCCACCGTAAGCTCATTGTGTCTTCACATAATCTGTACTCGTTAGATTT 607
Query 591 CGATTCAATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACTCAATTATCCTCTTAA 650
| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 608 CAATTCGATCGGTGACGGAATTAGGGATTTAGCGGCTGTGGAACACAATTATCCTCTTAA 667
Query 651 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGAGAGAGCATCTGTACGA 710
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 668 AGACGATCCAAGCATTTTCTCTGAGATGATTAGGAATTACGTGGGGGACCATCTGTACGA 727
Query 711 TGATCGTCGTGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 770
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TGATCGTCGCGTGATGCTTAAGCTGAATGCGAAATCGTATCGAAGAAACTGGGTTGAGAT 787
Query 771 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTATCTTGTA 830
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 788 CGTTGGATCTTCCAATGGTTTAGTGTGTATCTCTCCTGGTGAAGGAGCTGTTTTCTTGTA 847
Query 831 TAATCCAACCACCGGAGATTCCAAGAGATTACCTGAAACTTTGCGTCCCAAATCTGTAGA 890
||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 848 TAATCCAACTACCGGAGATTCCAAGAGATTACCTGAAAATTTTCGTCCCAAATCTGTAGA 907
Query 891 ATACGGAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGATCTCACTGATGATTA 950
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 908 ATACGAAAGAGATAATTTCCAAACTTATGGATTTGGTTTCGATGGTCTCACTGATGATTA 967
Query 951 CAAAGTGGTGAAGCTTGTTGCTACCAGTGACGATATTCTTGGTGCTAGTGTCTATTCCTT 1010
|||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 968 CAAATTGGTGAAGCTTGTTGCTACCAGTGAAGATATTCTCGATGCTAGTGTCTATTCCTT 1027
Query 1011 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAACACAACGATGGCTTCTA 1070
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1028 GAAGGCTGACTCATGGAGACGGATCTGCAATTTGAATTATGAGCACAACGATGGCTCCTA 1087
Query 1071 CACGTCCGGTGTACATTTCAACGGTGCGATTCACTGGGTTTTCGCAGAGATTAGCCACAG 1130
|||||||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||
Sbjct 1088 CACGTCCGGTGTGCATTTCAACGGTGCGATTCACTGGGTGTTCACAGAGAGTAGGCACAA 1147
Query 1131 CCAAAGAGTGGTCGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCATTGCC 1190
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1148 CCAAAGAGTGGTTGTAGCATTTGATATTCAAACCGAGGAGTTTCGAGAGATGCCAGTGCC 1207
Query 1191 TGATGAAGCTGAAGATTGT-CACCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAGTG 1249
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1208 TGATGAAGCTGAAGATTGTTC-CCATAGGTTTAGCAACTTTGTGGTCGGAAGTCTCAATG 1266
Query 1250 GACGTCTCTGTGTGGTCAATAGTTGCTACGA-GCAGCACGATGATATATGGCTGATGAGT 1308
||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||
Sbjct 1267 GACGTCTCTGTGTGGTCAATAGTTGCTACGATGT-GCATGATGATATATGGGTGATGAGT 1325
Query 1309 GAGTACGGTGAAGCTAAATCATGGAGCCGAATCCGGATCAACTTGTTGTATAGGTCGATG 1368
|||||||||||||||||||| |||||| |||| || ||||||||||||||||||||||||
Sbjct 1326 GAGTACGGTGAAGCTAAATCCTGGAGCAGAATTCGAATCAACTTGTTGTATAGGTCGATG 1385
Query 1369 AAACCGCTGTGTTCGACTAAGAAGGATGAAGAGGTTCTTCTAGAGCTTGATGGAGACATG 1428
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1386 AAACCGCTCTGTTCGACTAAGAACGATGAAGAGGTTCTTCTGGAGCTTGATGGAGACCTG 1445
Query 1429 GTGTTGTACAACTTTGAGACCAATGCATCGAGTAATCTGGGAATTCGCGGGATTAAGCTT 1488
||||||||||||||||| |||||||||||||||||||| |||||| | ||| |||||||
Sbjct 1446 GTGTTGTACAACTTTGAAACCAATGCATCGAGTAATCTAGGAATTTGTGGGGTTAAGCTC 1505
Query 1489 AGTGACGGATTTGAGGCCAATACGTACGTAGAGAGCCTCATATCACCCAACCCTTGTGGT 1548
|||||||| || ||||| ||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 1506 AGTGACGGGTTCGAGGCAAATACATACGTAGAGAGCCTCATATCACCCAACTCTTATGGT 1565
Query 1549 AGAGAGAGCTGAGAAAGTCTGCTTTCT-CTAAGAATATAATAAACCAACATTCGGATTAG 1607
| ||||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 1566 ATAGAGAGCTGAGGAAGTCTGCTTTTTGCTAAGA-TATAATAAACCAACATTCGGATTAG 1624
Query 1608 CAATGTTTTAG 1618
||||||||||
Sbjct 1625 AAATGTTTTAG 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79919267640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5