BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477936 Length=2422 Score E Sequences producing significant alignments: (Bits) Value AT3G06340.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 3410 0.0 > AT3G06340.1 | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920207-1923311 REVERSE LENGTH=2588 Length=2588 Score = 3410 bits (1846), Expect = 0.0 Identities = 2274/2472 (92%), Gaps = 63/2472 (3%) Strand=Plus/Plus Query 1 GGGTTGGGGGTTCTATGATACTTGTGCTGGATTGATAATGAGTATCAACAGAGATGAGGC 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 130 GGGTTGGGGGTTCTATGATACTTGTACTGGATTGATAATGAGTATCAACAGAGATGAGGC 189 Query 61 TCTTAGAGCCAAAGAT-TTAGCGGAGGGTTTGATGAAAAAGACTGATTTTACTGCTGCTC 119 |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 190 TCTTAGAGCCAAAGATCTT-GCGGAGGGTTTGATGAAAAAGACCGATTTTACTGCTGCTC 248 Query 120 GTAAGCTTGCTTTGAAGGCTCAAAAAATGGACTCCAGCTTGGAGAACATATCTCGTATGA 179 |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 249 GTAAGCTTGCAATGAAGGCTCAAAAAATGGATTCCAGCCTGGAGAACATATCTCGTATGA 308 Query 180 TAATGGTCTGTGATGTGCACTGTGCTGCAACACAGAAGCTGTTCGGAACTGAGATGGATT 239 ||||||| |||||||| |||||||||||||| ||||| |||| |||||||||||||||| Sbjct 309 TAATGGTTTGTGATGTTCACTGTGCTGCAACGGAGAAGTTGTTTGGAACTGAGATGGATT 368 Query 240 GGTACGGTATACTTCAGGTTGAGCAGATTGCTAATGATATTATCATCAAGAAACAGTACA 299 |||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 369 GGTATGGTATTCTTCAGGTTGAGCAGATCGCTAATGATGTTATCATCAAGAAACAGTACA 428 Query 300 AGCGGCTTGCGCTTCTTCTCCACCCTGATAAAAATAAGCTTCCGGGTGCTGAATCTGCTT 359 || ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| Sbjct 429 AGAGGCTTGCGCTTCTTCTCCACCCTGACAAAAATAAGCTCCCCGGTGCTGAATCTGCTT 488 Query 360 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAAAGAGAAAAGGATGCTTCATG 419 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 489 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAGAGAGAAAAGGACGCTTCATG 548 Query 420 ACATTAAACGCAAAACTTTGAGAAAGCCTGCACCTGCACCGCCATATAAAACCCAACAGA 479 ||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| Sbjct 549 ACAATAAACGCAAAACTTGGAGAAAGCCTGCA---GCACCGCCATATAAAGCCCAACAGA 605 Query 480 TGCCGAATTATCACACACAACCTGTTTTTCGGGCAAGCGTCAGTACGAGGAACATCTTCA 539 ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| Sbjct 606 TGCCGAATTATCACACACAACCTCATTTTCGGGCAAGCGTCAATACGAGAAACATCTTCA 665 Query 540 CTGAATTGAGACCTGAAAACAGGCATCCTTACCAGAAAGCTCAAGCCCAACCAGCTGCTT 599 |||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 666 CTGAGTTGAGACCCGAAATCAGGCATCCTTTCCAGAAAGCTCAAGCCCAACCAGCTGCTT 725 Query 600 TCAGTCACCTTACAACCTTTTGGACCACTTGT-CCATTCTGCCGGGCT-AGGTATGAATA 657 ||| |||||||| ||||||| ||||| ||||| | |||||||||| | ||||||||||| Sbjct 726 TCACTCACCTTAAAACCTTTGGGACCTCTTGTGTC-TTCTGCCGGG-TGAGGTATGAATA 783 Query 658 TCAACGGGCACATGTCAACAAGGAAGTCACTTGTCG-GCCTTGTATTAAACGGTTCACTG 716 | | |||||||||||||||||||||||||||||| | | |||||| ||||| ||||||| Sbjct 784 TGATCGGGCACATGTCAACAAGGAAGTCACTTGT-GAGACTTGTAAAAAACGTTTCACTG 842 Query 717 CTTTTGAAGAACCTTTGCAGAGTGCACCACCGGCGAAAGGGCCATGTCAGACTACTTATT 776 |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| Sbjct 843 CTTTTGAAGAACCTTTGCAGAGTGCACCACAGGCGAAAGGCCCATCTCAGACTACTTATT 902 Query 777 CCTTCCCACAACAGAACAAATTTCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTT 836 ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 903 GCTTCCCACAGCAGAGCAAATTCCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTC 962 Query 837 CAGAGAATCTTCCTACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 896 |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 CAGAAAATCCTCCCACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 1022 Query 897 CAAAA-ATCAATGGGAAGAGGAAGAGAAAGAATATGGTTGAATGTAGTGAAAGCAGCTCT 955 ||||| | |||||||||||||||||| |||||| ||| ||||||||||| || |||||| Sbjct 1023 CAAAACA-CAATGGGAAGAGGAAGAGGAAGAATGTGGCTGAATGTAGTG-AA--AGCTCT 1078 Query 956 GACAGTGAAAGTAGCAGTGAGTCAG-A-A-GATG-------TG--ACTATGGCAGCACAA 1003 ||||||||||||||||||||||||| | | |||| || |||| |||||||||| Sbjct 1079 GACAGTGAAAGTAGCAGTGAGTCAGAAGATGATGTAAATAATGATACTACGGCAGCACAA 1138 Query 1004 GATTTGGGGGCCAATGAAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1063 |||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 GATTCAGGGTCCAATGGAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1198 Query 1064 TCCTATAATGAGAATTTGAGCGATGATGATGTAGACTTAGTCAACCACAATGGGAAAGGG 1123 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| Sbjct 1199 TCCTATAATGAGAATTTGAGCGATGATGATGTCGACTTAGTCAACGACAATGGGGAAGGG 1258 Query 1124 TCC-GGAAAACACATAGATACTGAAAGGGAAGAAGAGACAAAGGAGGAAAAGCAGACAAA 1182 ||| |||||| |||| ||||||||||||||| |||| ||| |||| |||||||||||||| Sbjct 1259 TCCGGGAAAA-ACATTGATACTGAAAGGGAAAAAGAAACAGAGGAAGAAAAGCAGACAAA 1317 Query 1183 TGAGGATCATAGCTCTACTGAAAGCATAGACATGAAGGGGAAGATAAAAGTTGACCAGGT 1242 |||| |||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct 1318 TGAGAATCATAGCTCCACTGAAAGCATAGACATGAATGGGAAGATAGAAGTTGATCAGGT 1377 Query 1243 GGTAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1302 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GGAAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1437 Query 1303 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGAATTCGATAAGTTGAGGGAAAA 1362 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1438 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGACTTCGATAAGTTGAGGGAGAA 1497 Query 1363 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGGATGCCTAG 1422 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1498 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGAATGCCTAG 1557 Query 1423 ATTTTATGCTCTCATAAGAAAAGTTACAACTCCGGATTTCATGCTTAAGTACGTATGGTT 1482 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| Sbjct 1558 ATTTTATGCTCTCATAAAAAAAGTTACAACTCCGGATTTCATGCTTAGGTACGTCTGGTT 1617 Query 1483 AGAGGTAGATCAAGATCAAGAGAATGAAACACCAAAGTTGCCTGTCTCTGTTGGTAAGTT 1542 |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1618 CGAGGTAGACCAAGATCAAGAGAATGAAACACCAAATTTGCCCGTCTCTGTTGGTAAGTT 1677 Query 1543 TAAAGTTGGGAATATGGAGGAGACGAATGAGTGTTCCATTTTCTCTCGTTTGGTCTACAG 1602 | |||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||| Sbjct 1678 TGTAGTTGGGAATATTGAGGAGACGAATTTGTGTTCCATTTTCTCTCATTTTGTCTACAG 1737 Query 1603 CACAACAAGAATCAGGGGTCGCAAGTTTACGGTATTCCCAAAGAAAGGAGAAACATGGGC 1662 |||||||| ||||||| |||||||||||| || ||||||||||||||||||| |||||| Sbjct 1738 CACAACAAAAATCAGGACTCGCAAGTTTACTGTTTTCCCAAAGAAAGGAGAAATATGGGC 1797 Query 1663 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATTAAGTACGA 1722 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1798 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATGAAGTACGA 1857 Query 1723 GTATGAATTTGTTGAGATCTTGTCTGATCATGCAGAGGGAGCCACGGTGTCAGTTGGGTT 1782 ||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| Sbjct 1858 GTATGAATTTGTTGAGATCCTGTCTGACCATGCAGAGGGAGCCACGGTATCAGTTGGGTT 1917 Query 1783 CTTGTCTAAAGTGAAAGGCTTTAATTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1842 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1918 CTTGTCTAAAGTGCAAGGCTTTAACTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1977 Query 1843 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 1902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1978 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 2037 Query 1903 ATTAACAGGAACAGAAGGAAGAGGCGTAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 1962 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2038 ATTAACAGGAACAGAAGGAAGAGGCATAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 2097 Query 1963 TTTACCAGTCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCAGCTCAAGACCGAGACCA 2022 ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2098 TTTGCCAGCCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCTGCTCAAGACCGAGACCG 2157 Query 2023 TCAATCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTGTTGTGT 2082 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2158 CCAGTCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTTTTGTGA 2217 Query 2083 CCATGACTTGCTCAAATC-AAAGTTCTTGGAGCTCGTTT-ATTTTGTTCAAGCGTACAGG 2140 |||||| |||||||| | ||| |||||||||||||||| |||||||||| ||||||||| Sbjct 2218 CCATGAATTGCTCAACGCGAAA-TTCTTGGAGCTCGTTTTATTTTGTTCAGGCGTACAGG 2276 Query 2141 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCTTCGTT-AAGCTCGATCCCTCTCTG 2199 ||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||| ||| Sbjct 2277 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCATCGTTTAAGCCCGATACCTCGCTG 2336 Query 2200 TTGTCTTGTGACATACTCGAGTCATGATACTGGTTGGAtttttttttGTTATATGTCT-- 2257 |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 2337 TTGTCTTGTGACATACTCGAGTCATGATTCTGGTGGGAATTTTTTTTGTTATATGTCTAG 2396 Query 2258 -T-TT---T---------------AGGTTCACTCAGACTTGAAACTTAACCAGTATTTGT 2297 | || | |||||| ||||||||||||||||||||||||||||| Sbjct 2397 CTCTTACGTTTCTGTTTTTGTTTTAGGTTCTCTCAGACTTGAAACTTAACCAGTATTTGT 2456 Query 2298 CTCAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAATGAAGTGGTGAAAACCCTTTT 2357 || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2457 CTAAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAAACAAGTGGTGAAAACCCTTTT 2516 Query 2358 TGGCCATGTTGTGCTTGTACCATCCATTTTTCACTTGTAA-----AATA--GCATCAGTT 2410 ||||||| || | ||||||| ||||||| ||||||||||| |||| ||||||||| Sbjct 2517 TGGCCATATTCTACTTGTACTATCCATTGTTCACTTGTAAGTTGTAATATAGCATCAGTT 2576 Query 2411 TCGATTTCTGTT 2422 |||||||||||| Sbjct 2577 TCGATTTCTGTT 2588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120280505820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5