BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477952

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06470.1 | Symbols:  | GNS1/SUR4 membrane protein family | c...  1417    0.0  
  AT3G06460.1 | Symbols:  | GNS1/SUR4 membrane protein family | c...   730    0.0  


> AT3G06470.1 | Symbols:  | GNS1/SUR4 membrane protein family | 
chr3:1984168-1985259 FORWARD LENGTH=1092
Length=1092

 Score = 1417 bits (767),  Expect = 0.0
 Identities = 923/995 (93%), Gaps = 23/995 (2%)
 Strand=Plus/Plus

Query  1     CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT  60
             |||||||||| ||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct  28    CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT  87

Query  61    ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT  120
             ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct  88    ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT  147

Query  121   CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA  179
             |||||| | ||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct  148   CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA  206

Query  180   CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT  238
             || |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| ||||
Sbjct  207   CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT  265

Query  239   CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC  298
             ||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||
Sbjct  266   CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC  325

Query  299   GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC  357
             |||||||||||||| ||||||||||||  |||||||||| ||| ||| ||||||||||||
Sbjct  326   GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC  384

Query  358   CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG  417
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  385   CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG  444

Query  418   GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT  477
             ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct  445   GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT  504

Query  478   ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT  537
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  505   ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT  564

Query  538   TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC  597
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  565   TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC  624

Query  598   TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT  656
             |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct  625   TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT  683

Query  657   CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC  715
             |||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct  684   CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC  742

Query  716   GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC  775
             ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  743   GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC  802

Query  776   TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA  834
             ||||||||||||||| ||||||||||||||||||| |||| ||| |||||  || |||||
Sbjct  803   TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCA  861

Query  835   TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA  893
              |||||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct  862   AAAAAAGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA  920

Query  894   TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG----  949
             |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
Sbjct  921   TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT  980

Query  950   ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA  980
                 ||||||||||| ||||| |||||||||||||
Sbjct  981   TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA  1014


> AT3G06460.1 | Symbols:  | GNS1/SUR4 membrane protein family | 
chr3:1982659-1983714 FORWARD LENGTH=1056
Length=1056

 Score =  730 bits (395),  Expect = 0.0
 Identities = 677/810 (84%), Gaps = 32/810 (4%)
 Strand=Plus/Plus

Query  11   AATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCTACATCGCCAA  70
            |||||||||  ||| |||||| |||||||||||||||||  ||||||||||||| |||||
Sbjct  22   AATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGTCCACCACCCCTACATTGCCAA  81

Query  71   TTTCACTTGGATCGAAGGTGAAAC-CTTAGGCTCCACCGTCTTCTTCGTCTCCGTCGCT-  128
             ||||| |||| |||||||||||| | ||||||||||||| ||||| ||||  |||| | 
Sbjct  82   CTTCACGTGGACCGAAGGTGAAACAC-TAGGCTCCACCGTTTTCTTTGTCTTTGTCG-TC  139

Query  129  GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCACTCCCCACA  188
            |||||| |||||||||||||||||||| ||||||||| |  | |||||||||||||||||
Sbjct  140  GTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACACCGTCGATTCACTCCCCACA  199

Query  189  CTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCT-AGTCCTCTGT-CTCC  246
            ||| ||||||| || ||||||||||||||||||||||||||||| | | |||| | ||||
Sbjct  200  CTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAGCCTCA-TTCTCT-TCCTCC  257

Query  247  TATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGCGTCTTCAG  306
            | ||||||| ||||||||||||||||||||||||| |||  || |||      || || |
Sbjct  258  TCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAA--TC-TCT------TCCTCGG  308

Query  307  ATCCGACGGCGCGTTTCCTAAACG-CGATTTGTTTCCCCCTCGACGTTAAACCTAACGGA  365
            | |||| ||||||| || |  ||| || ||||||||||||||||||| |||||||| |||
Sbjct  309  ACCCGAAGGCGCGTCTCTTCGACGCCG-TTTGTTTCCCCCTCGACGTGAAACCTAAGGGA  367

Query  366  CCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCGGAGACACC  425
            ||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||| |
Sbjct  368  CCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCGTAGACA-C  426

Query  426  A-TCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA  484
            | | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  ACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA  486

Query  485  CGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGTTTCCGGT  544
            ||| ||||||||| |  |||| || |||||| | ||||| || || ||||||||||| ||
Sbjct  487  CGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGTTTCCTGT  546

Query  545  TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC  604
            || |||||||  ||| |||||||| || || || |||||||| ||||| |||||||||||
Sbjct  547  TGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTCCTCTGCGC  606

Query  605  CGTTGGATCGAGGCCGA-GTTGGAAGA-GATTGGTGACGGATTGTCAGATTGTTCAGTTT  662
              | ||||||||||| | || |||||| | ||||||||| ||| ||| || |||||||||
Sbjct  607  TATCGGATCGAGGCCCAAGT-GGAAGAAG-TTGGTGACGAATTTTCAAATGGTTCAGTTT  664

Query  663  GTTTTCAGTTTCGGATTAT---CCGGTTGGATGCTCCGAGAGCATT-TGATCGGGTCGGG  718
            | |||| |  | || |||    ||| ||||||||||| |||||||| |  ||||||||||
Sbjct  665  GCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATT-TCGGGTCGGG  723

Query  719  TTGCTCCGGGATTTGGGGATGGTG-TTTCAACGCTGCGTTTAATGCTTCTCTTTTGGCTC  777
            |||| |||||||||||  | | |  |||||| | || ||||| ||||||||| |||||||
Sbjct  724  TTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATTGGCTC  782

Query  778  TCTTTTCCAACTTTCATTCAAAGAATTATG  807
            |||| | |||||| || || ||||| ||||
Sbjct  783  TCTTCTACAACTTCCACTCCAAGAACTATG  812



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47973610385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5