BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477952 Length=980 Score E Sequences producing significant alignments: (Bits) Value AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 1417 0.0 AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 730 0.0 > AT3G06470.1 | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984168-1985259 FORWARD LENGTH=1092 Length=1092 Score = 1417 bits (767), Expect = 0.0 Identities = 923/995 (93%), Gaps = 23/995 (2%) Strand=Plus/Plus Query 1 CACCGGAGGCAATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCT 60 |||||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||| Sbjct 28 CACCGGAGGCTATGGCATCAATTTACTCCTCTTTAACCTACTGGCTCGTTAACCACCCCT 87 Query 61 ACATCGCCAATTTCACTTGGATCGAAGGTGAAACCTTAGGCTCCACCGTCTTCTTCGTCT 120 ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| | Sbjct 88 ACATCTCCAATTTTACTTGGATCGAAGGTGAAACCCTAGGCTCCACCGTCTTTTTCGTAT 147 Query 121 CCGTCGCT-GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCA 179 |||||| | ||||||||||||||||||||||| ||| |||||||||||| |||||||||| Sbjct 148 CCGTCG-TAGTCTCCGTTTACCTCTCCGCCACGTTCCTCCTCCGATCCGCCATCGATTCA 206 Query 180 CTCCCCA-CACTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCTAGTCCT 238 || |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||| |||| Sbjct 207 CT-CCCATCACTCAGTCCACGTATCCTCAAACCGATCACAGCCGTCCACAGCCTAATCCT 265 Query 239 CTGTCTCCTATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGC 298 ||||||||| |||||| |||||||||| |||||||||||||| |||||||| |||||||| Sbjct 266 CTGTCTCCTCTCCTTAGTCATGGCCGTCGGTTGCACTCTCTCAATAACCTCATCTCACGC 325 Query 299 GTCTTCAGATCCGACGGCGCGTTTCCTAAACGCGATTTG-TTTCCCCCTCGACGTTAAAC 357 |||||||||||||| |||||||||||| |||||||||| ||| ||| |||||||||||| Sbjct 326 GTCTTCAGATCCGATGGCGCGTTTCCTTCACGCGATTTGCTTT-CCCGTCGACGTTAAAC 384 Query 358 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCG 417 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 385 CTAACGGACCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCGAAGATCCTCGAGTTCG 444 Query 418 GAGACACCATCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCT 477 ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| | Sbjct 445 GAGACACGATCCTCATCATACTCGGCAAATCAATCCAACGGCTATCCTTCCTCCACGTGT 504 Query 478 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 505 ACCACCACGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAATCGATGT 564 Query 538 TTCCGGTTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 597 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 565 TTCCGATTGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCC 624 Query 598 TCTGCGCCGTTGGATCGAGGCCGA-GTTGGAAGAGATTGGTGACGGATTGTCAGATTGTT 656 |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 625 TCTGCGCCGTTGGATCGAGGCCCAAGT-GGAAGAGATTGGTGACGGATTGTCAGATTGTT 683 Query 657 CAGTTTGTTTTCAGTTTCGGATTATCCGGTTGGATGCTCCGAGAGCATTTGAT-CGGGTC 715 |||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| Sbjct 684 CAGTTTGTTTTCAGTTTCGGGTTATCCGGTTGGATGCTCCGAGAGCACTT-ATTCGGGTC 742 Query 716 GGGTTGCTCCGGGATTTGGGGATGGTGTTTCAACGCTGCGTTTAATGCTTCTCTTTTGGC 775 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 743 GGGTTGCACCGGGATTTGGGGATGGTGTTTCAACGCTGCATTTAATGCTTCTCTTTTGGC 802 Query 776 TCTCTTTTCCAACTTTCATTCAAAGAATTATGTCACGAAGACAA-GAGAGGTGGTTGGCA 834 ||||||||||||||| ||||||||||||||||||| |||| ||| ||||| || ||||| Sbjct 803 TCTCTTTTCCAACTTCCATTCAAAGAATTATGTCAAGAAGCCAACGAGAGA-GGATGGCA 861 Query 835 TAAAAAGTGATTAGATTAGTTTCTTGGACAATA-GTTAAAACCTCTCATTGTGTCTTGAA 893 |||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| Sbjct 862 AAAAAAGCGATTAGATTGGTTTCTTGGACAATAAGT-AAAACCTCTCATTGTGTCTTGAA 920 Query 894 TTGTTGATTAGTTTCCCCACAAAAGGATTAATTGTCTTGAATTGTTGATTATTTTG---- 949 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 921 TTGTTGATTAGTTTCCACACAAAAGGATTAATTGTCTTGAATTGTTGTTTATTTTGAAAT 980 Query 950 ----GTCTGTGTTGTTACTTGAAAATGTTGAGATA 980 ||||||||||| ||||| ||||||||||||| Sbjct 981 TTTTGTCTGTGTTGT-ACTTGCAAATGTTGAGATA 1014 > AT3G06460.1 | Symbols: | GNS1/SUR4 membrane protein family | chr3:1982659-1983714 FORWARD LENGTH=1056 Length=1056 Score = 730 bits (395), Expect = 0.0 Identities = 677/810 (84%), Gaps = 32/810 (4%) Strand=Plus/Plus Query 11 AATGGCATCAATTTCCTCCACTCTAACCTACTGGCTCGTTAACCACCCCTACATCGCCAA 70 ||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| ||||| Sbjct 22 AATGGCATCTGTTTACTCCACCCTAACCTACTGGCTCGTCCACCACCCCTACATTGCCAA 81 Query 71 TTTCACTTGGATCGAAGGTGAAAC-CTTAGGCTCCACCGTCTTCTTCGTCTCCGTCGCT- 128 ||||| |||| |||||||||||| | ||||||||||||| ||||| |||| |||| | Sbjct 82 CTTCACGTGGACCGAAGGTGAAACAC-TAGGCTCCACCGTTTTCTTTGTCTTTGTCG-TC 139 Query 129 GTCTCCGTTTACCTCTCCGCCACATTCGTCCTCCGATCCGTCATCGATTCACTCCCCACA 188 |||||| |||||||||||||||||||| ||||||||| | | ||||||||||||||||| Sbjct 140 GTCTCCCTTTACCTCTCCGCCACATTCCTCCTCCGATACACCGTCGATTCACTCCCCACA 199 Query 189 CTCAGTCCCCGTATACTCAAACCAATCACAGCCGTTCACAGCCT-AGTCCTCTGT-CTCC 246 ||| ||||||| || ||||||||||||||||||||||||||||| | | |||| | |||| Sbjct 200 CTCGGTCCCCGCATTCTCAAACCAATCACAGCCGTTCACAGCCTCA-TTCTCT-TCCTCC 257 Query 247 TATCCTTAATCATGGCCGTTGGTTGCACTCTCTCCATAACCTCGTCTCACGCGTCTTCAG 306 | ||||||| ||||||||||||||||||||||||| ||| || ||| || || | Sbjct 258 TCTCCTTAACCATGGCCGTTGGTTGCACTCTCTCCCTAA--TC-TCT------TCCTCGG 308 Query 307 ATCCGACGGCGCGTTTCCTAAACG-CGATTTGTTTCCCCCTCGACGTTAAACCTAACGGA 365 | |||| ||||||| || | ||| || ||||||||||||||||||| |||||||| ||| Sbjct 309 ACCCGAAGGCGCGTCTCTTCGACGCCG-TTTGTTTCCCCCTCGACGTGAAACCTAAGGGA 367 Query 366 CCGCTTTTCTTCTGGGCTCAAGTCTTCTACCTCTCCAAGATCCTCGAGTTCGGAGACACC 425 ||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||| | Sbjct 368 CCGCTTTTCTTTTGGGCTCAAGTCTTTTACCTCTCGAAGATCCTTGAGTTCGTAGACA-C 426 Query 426 A-TCCTCATCATACTCGGCAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 484 | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 427 ACTTCTCATCATACTCAACAAATCAATCCAACGGCTCTCGTTCCTCCACGTCTACCACCA 486 Query 485 CGCGACGGTTGTGGTCATGTGTTATCTCTGGCTCCGAACTCGCCAGTCGATGTTTCCGGT 544 ||| ||||||||| | |||| || |||||| | ||||| || || ||||||||||| || Sbjct 487 CGCAACGGTTGTGATTTTGTGCTACCTCTGGTTACGAACACGTCAATCGATGTTTCCTGT 546 Query 545 TGCGCTCGTGACGAATTCGACGGTACACGTCATCATGTACGGTTACTACTTCCTCTGCGC 604 || ||||||| ||| |||||||| || || || |||||||| ||||| ||||||||||| Sbjct 547 TGGGCTCGTGTTGAACTCGACGGTCCATGTGATTATGTACGGGTACTATTTCCTCTGCGC 606 Query 605 CGTTGGATCGAGGCCGA-GTTGGAAGA-GATTGGTGACGGATTGTCAGATTGTTCAGTTT 662 | ||||||||||| | || |||||| | ||||||||| ||| ||| || ||||||||| Sbjct 607 TATCGGATCGAGGCCCAAGT-GGAAGAAG-TTGGTGACGAATTTTCAAATGGTTCAGTTT 664 Query 663 GTTTTCAGTTTCGGATTAT---CCGGTTGGATGCTCCGAGAGCATT-TGATCGGGTCGGG 718 | |||| | | || ||| ||| ||||||||||| |||||||| | |||||||||| Sbjct 665 GCTTTCGGCATGGGGTTAGGAGCCGCTTGGATGCTCCCAGAGCATTATT-TCGGGTCGGG 723 Query 719 TTGCTCCGGGATTTGGGGATGGTG-TTTCAACGCTGCGTTTAATGCTTCTCTTTTGGCTC 777 |||| ||||||||||| | | | |||||| | || ||||| ||||||||| ||||||| Sbjct 724 TTGCGCCGGGATTTGGACA-GTTTATTTCAATGGTGTGTTTACTGCTTCTCTATTGGCTC 782 Query 778 TCTTTTCCAACTTTCATTCAAAGAATTATG 807 |||| | |||||| || || ||||| |||| Sbjct 783 TCTTCTACAACTTCCACTCCAAGAACTATG 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47973610385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5