BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477956
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06510.2 | Symbols: SFR2 | Glycosyl hydrolase superfamily pr... 1892 0.0
> AT3G06510.2 | Symbols: SFR2 | Glycosyl hydrolase superfamily
protein | chr3:2016385-2019677 FORWARD LENGTH=2180
Length=2180
Score = 1892 bits (1024), Expect = 0.0
Identities = 1112/1155 (96%), Gaps = 3/1155 (0%)
Strand=Plus/Plus
Query 55 TCATCGGCGATTATGGAATTAGTCGCATTGCTT-ATTAAGGTCGCCGGTCTTGTGGCCAC 113
||||||||||||||||||||| |||||||| || |||||||||||||| ||| |||||||
Sbjct 54 TCATCGGCGATTATGGAATTATTCGCATTG-TTAATTAAGGTCGCCGGACTTTTGGCCAC 112
Query 114 TATCACCGTTGGAGCCAACGCATTTTCCTACTCTCGGTTCCGTCGCCAGAATCTCGCGAA 173
| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 113 TGTCACCGTTGGAGCCAACGTAGTTTCCTACTCTCGTTTCCGTCGCCAGAATCTCGCGAA 172
Query 174 GTTTCGCTCTCCAATCGACGAATCTAAAGAAGTTCTCGCCGATTTCAATTCCATTGAACA 233
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 173 GTTTCGCTCTCCAATCGACGAATCTAAAGAAGTTCTCGCTGATTTCAATTCCATTGAACA 232
Query 234 CAAGGAAGGCAAGTTCTTCTTTGGGTTGGCTACTGCACCTGCTCATGTGGAGGATGATCT 293
| ||||||| || |||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 233 CGAGGAAGGAAAATTCTTCTTTGGGTTAGCTACTGCACCTGCTCATGCGGAGGATGATTT 292
Query 294 AGATGATGCTTGGCTCCAGTTTGCAAAAGAAACTCCATGTTCAGCATCAGATGCAGAGGC 353
|||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||
Sbjct 293 AGATGATGCTTGGCTCCAGTTTGCTAAAGAAACACCATGTTCAGCAGAAGAAGCAGAGGC 352
Query 354 TGCTGATAAGAAAGCTAAGAGGAAGAAGGTTAAGCTTGCTGTGGGAGCTATAACCAAAGG 413
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TGCTGATAAGAAAGCTAGGAGGAAGAAGGTTAAGCTTGCTGTGGGAGCTATAACCAAAGG 412
Query 414 CTTGGCCAAGAACTCACATGGAAAAGAAGATAAGACTGCAGCTGATAAGCCACCCTCTAA 473
||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 413 CTTGGCCAAGAACACTCATGGCAAAGAAGATAAGAATGCAGCTGATAAGCCACCCTCTAA 472
Query 474 AAATGTGGCTGCGTGGCATAACGCTCCTCACGCCGAGGACAGGCTTAAATTTTGGTCAGA 533
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 473 AAATGTTGCCGCGTGGCATAACGCTCCTCACGCGGAGGACAGGCTTAAATTTTGGTCAGA 532
Query 534 TCCTGACAAAGAAGTGAAGCTAGCCAAAGATACTGGCGTTACTGTCTTTAGGATGGGAGT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCCTGACAAAGAAGTGAAGCTAGCCAAAGATACTGGCGTTACTGTCTTTAGGATGGGAGT 592
Query 594 CGATTGGTCTAGGATCATGCCAGTAGAGCCTACCAAAGGAATTAAGGAAGCAGTTAACTA 653
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 593 CGATTGGTCTAGGATCATGCCAGTTGAGCCCACCAAAGGAATTAAGGAAGCAGTTAACTA 652
Query 654 TCAGGCTGTCGAACACTATAAATGGATACTTAAAAGAGTTCGTTCAAATGGAATGAAGGT 713
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 653 TGAGGCTGTCGAACACTATAAATGGATACTTAAAAAAGTTCGTTCAAATGGAATGAAGGT 712
Query 714 GATGCTAACGCTGTTTCATCATTCATTGCCACCATGGGCAGCTGATTATGGTGGCTGGAA 773
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 713 GATGCTAACGCTGTTTCATCATTCATTGCCACCATGGGCAGCTGACTATGGTGGCTGGAA 772
Query 774 AATGGAGAAGACAGTCGACTACTTTATGGACTTTACCAGGATTGTTGTGGATTCCATGTT 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AATGGAGAAGACAGTCGACTACTTTATGGACTTTACCAGGATTGTTGTGGATTCCATGTA 832
Query 834 TGATTTGGTAGACTCTTGGGTAACATTTAATGAACCCCATATCTTCACCATGCTTACCTA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGATTTGGTAGACTCTTGGGTAACATTTAATGAACCCCATATCTTCACCATGCTTACCTA 892
Query 894 CATGTGTGGGTCTTGGCCCGGTAACAACCCTGATTTTCTGGAGATTGCTACATCTACTCT 953
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 893 CATGTGTGGATCTTGGCCCGGTAACAACCCTGATTTTCTGGAGATAGCTACATCTACTCT 952
Query 954 ACCAATGGGTGTATTCCATCGAGCCTTACACTGGATGGCTGTTGCTCACTCAAAGGCCTA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACCAATGGGTGTATTCCATCGAGCCTTACACTGGATGGCTGTTGCTCACTCAAAGGCCTA 1012
Query 1014 TGACTACATCCATGGGAAAATTTCCTTGAAAAAACCTTTGGTAGGTGTTGCGCACCACGT 1073
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1013 TGACTACATCCATGGGAAAATTTCTTTGAAAAAACCTTTGGTAGGGGTTGCGCACCACGT 1072
Query 1074 CTCCTTTATGCGACCATATGGGCTCTTTGATATCGGGGCCGTTACTATTAGTAATTCCCT 1133
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1073 CTCCTTTATGCGACCATATGGGCTCTTTGATATCGGGGCTGTTACCATTAGTAATTCCCT 1132
Query 1134 CACTCTATTTCCATATATCGATAGCATTTGTGAGAAGTTGGATTTCATAGGCATCAACTA 1193
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 CACTATATTTCCATATATCGATAGCATTTGTGAGAAGTTGGATTTCATAGGCATCAACTA 1192
Query 1194 CTACGGACAGG-AAG 1207
||||||||||| |||
Sbjct 1193 CTACGGACAGGTAAG 1207
Score = 1297 bits (702), Expect = 0.0
Identities = 820/874 (94%), Gaps = 19/874 (2%)
Strand=Plus/Plus
Query 1201 CAGGAAGCAGTATGTGGTGCTGGACTAAAGCTTGTAGAGACTGATGAATACAGTGAATCT 1260
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 CAGGAAGCAGTGTGTGGTGCTGGACTAAAGCTTGTAGAGACTGATGAATACAGTGAATCG 1361
Query 1261 GGAAGAGGGGTGTATCCTGACGGACTCTACCGGGTGTTGTTGATGTTCCACGAGAGATAC 1320
||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1362 GGAAGAGGGGTATATCCTGATGGTCTCTACCGCGTGTTGTTGATGTTCCACGAGAGATAC 1421
Query 1321 AAACACCTGAAAGTTTCTTTCATCGTCACAGAAAATGGTGTGTCTGATGAAACAGATGTG 1380
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1422 AAACACCTGAAAGTTCCTTTTATCGTCACAGAAAATGGCGTGTCTGATGAAACAGATGTG 1481
Query 1381 ATTCGACGACCTTACCTGATCGAGCATCTCCTTGCCCTATATGCTGCAATGCTAAAGGGT 1440
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1482 ATTCGACGACCTTACCTGATCGAGCATCTCCTTGCCTTATATGCTGCAATGCTAAAGGGT 1541
Query 1441 GTTCCTGTGCTCGGTTACATATTCTGGACTATTTCCGACAACTGGGAATGGGCTGATGGA 1500
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1542 GTTCCTGTGCTCGGTTACATATTCTGGACTATTTCGGACAATTGGGAATGGGCTGATGGA 1601
Query 1501 TATGGTCCAAAATTTGGACTTGTTGCGGTTGACCGATCCCATAATCTTGCCCGAACCCTT 1560
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1602 TATGGTCCAAAATTTGGACTTGTTGCGGTTGACCGATCCCATGATCTTGCCCGAACTCTT 1661
Query 1561 CGGCCATCGTACCATCTCTTTTCCAAGATAGTTAAAAGTGGAAAAGTCACTCGTAAAGAC 1620
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1662 CGGCAATCATACCATCTCTTTTCCAAGATAGTTAAAAGTGGAAAAGTCACTCGGAAAGAT 1721
Query 1621 CGGTCTCTTGCATGGAACGAACTCCAAAAAGCTGCCAAAGCAGGAAAACTACGGCCATTC 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 CGGTCTCTTGCATGGAACGAACTCCAAAAAGCTGCCAAAGCAGGAAAACTACGGCCATTC 1781
Query 1681 TACCGAGCCGTTGATAATCATAATCTTATGTACGCAGATGGTCTCGACAAGCCTCAATGG 1740
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 TACCGAGGCGTTGATAATCATAATCTTATGTACGCAGATGGTCTCGACAAGCCTCAATGG 1841
Query 1741 AGACCGTTTGTCGATCGTGACTGGCGGTTTGGTCATTACCAAGTGGATGGTCTTCAAGAC 1800
||||||||||| || || ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1842 AGACCGTTTGTTGACCGCGACTGGCGGTTTGGTCACTACCAAATGGATGGTCTTCAAGAC 1901
Query 1801 CCATTGAGTCGCGTGGCTCGAACCCTTCTCATATGGCCACTAATCATGAAAAAGAGGATA 1860
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1902 CCGTTGAGTCGCGTGGCTCGAACCCTTCTCATATGGCCGCTTATCATGAAAAAGAGGATA 1961
Query 1861 AGAAAAGTTAAGATAAAGCACACCGATGATGCTGGGCTCGTTCTACATCCCGCTTTAGCC 1920
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1962 AGAAAAGTTAAGATCAAGCACACCGATGATGCTGGGCTTGTTCTACATCCTGCTTTAGCC 2021
Query 1921 TCACCCTTTGACTAGAGAAAGAGAGTAGAAGAAACCCGAGTGTACAAACTCTTTTCCCTG 1980
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 2022 TCACCCTTTGACTAGAGAAAGAG-GTAGAAGAAATCCGAGTGTACAAACTCATTTCCCTG 2080
Query 1981 TACGATTTGCCAAAACTTTGGG-----------A-------CGATTCACCGTTTTGTTGT 2022
|| ||||||||||| ||||||| | |||||||||||||||||||
Sbjct 2081 TATGATTTGCCAAACCTTTGGGCCTTTGGCGCCATTAGAGACGATTCACCGTTTTGTTGT 2140
Query 2023 TAATGTTTAAATAAAGGCAAAACGGCACGATGTT 2056
||||||||||||||||||||||||||| ||||||
Sbjct 2141 TAATGTTTAAATAAAGGCAAAACGGCATGATGTT 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104969339595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5