BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477990 Length=641 Score E Sequences producing significant alignments: (Bits) Value AT3G06750.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 839 0.0 > AT3G06750.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:2129623-2130315 REVERSE LENGTH=693 Length=693 Score = 839 bits (454), Expect = 0.0 Identities = 541/580 (93%), Gaps = 17/580 (3%) Strand=Plus/Plus Query 1 tctctctctctcttt-tgctttcatcttctctcttCCTTATCACTTGATTTTAGTCCAAA 59 ||||||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||| Sbjct 13 TCTCTCTCTCT-TTTCTTCTTTCATCTTCTCTCTTCCTTATCACTTGACTTTAGTCCAAA 71 Query 60 TCTCTAGCTCATTTGTCAGACAACAAAATTTCCGACAATGGAAGCAATCAGATTCTCGAA 119 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || Sbjct 72 TCTCTAGCTCATTTGTCAGACAAC-AAATTTCTGACAATGGAAGCAATCAGATTCTCTAA 130 Query 120 TTTGTCAGGTCTTCTTATACTGTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACCA 179 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | Sbjct 131 TTTGTCAGGTCTTCTTATTCTCTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACGA 190 Query 180 AACTATTTCTTGCACAATGTGTTCCTCTTGCGACAATCCTTGTAATCCTGTCCCATCTTC 239 |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 191 AACTGTTTCTTGCACAATGTGTTCCTCTTGCGACAATCCATGTAATCCTGTCCCATCTTC 250 Query 240 TTA--CT-CTCCTCCTCCTCCGCCTTCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 296 ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 251 TTACTCTCCTCCTCCTCCTCCGCCATCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC 310 Query 297 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGCTAAATACCCGCCTCCGTACGGTGGCGACGG 356 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 311 TCCTCCTCCTCCTTCAAGCTCCGGTGGTGTTAAATACCCGCCTCCGTACGGCGGCGACGG 370 Query 357 ATACGGTGGACAAGGCTACTATTATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 416 |||||||| | || | | ||||||||||||||||||||||||||||||||||||| Sbjct 371 CTACGGTGG-C-----TA-T-T-ATCCGCCTCCTTACTACGGCAATTACGGGACACCACC 421 Query 417 ACCGCCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCACACTCCTCCTCAGGGAAA 476 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 422 ACCACCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCCTCCTCAGGGATA 481 Query 477 TTCTGGTTCGGCTCGCTTACATGA-TTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 535 ||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 482 TTCAGGCTCGGCTCGTTTACA-GAATTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT 540 Query 536 GTTTTGTGTAACGGAGATTCATCTGTATTTAGCCGGGAAA 575 ||||||||| |||| ||||||||||||||| ||||||||| Sbjct 541 GTTTTGTGTGACGGCGATTCATCTGTATTTGGCCGGGAAA 580 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30944234552 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5