BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477990

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06750.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   839    0.0  


> AT3G06750.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr3:2129623-2130315 REVERSE LENGTH=693
Length=693

 Score =  839 bits (454),  Expect = 0.0
 Identities = 541/580 (93%), Gaps = 17/580 (3%)
 Strand=Plus/Plus

Query  1    tctctctctctcttt-tgctttcatcttctctcttCCTTATCACTTGATTTTAGTCCAAA  59
            ||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct  13   TCTCTCTCTCT-TTTCTTCTTTCATCTTCTCTCTTCCTTATCACTTGACTTTAGTCCAAA  71

Query  60   TCTCTAGCTCATTTGTCAGACAACAAAATTTCCGACAATGGAAGCAATCAGATTCTCGAA  119
            |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct  72   TCTCTAGCTCATTTGTCAGACAAC-AAATTTCTGACAATGGAAGCAATCAGATTCTCTAA  130

Query  120  TTTGTCAGGTCTTCTTATACTGTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACCA  179
            |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct  131  TTTGTCAGGTCTTCTTATTCTCTTAATGTCACTGCCTCTTTTAGTGACTTCAAAGGACGA  190

Query  180  AACTATTTCTTGCACAATGTGTTCCTCTTGCGACAATCCTTGTAATCCTGTCCCATCTTC  239
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  191  AACTGTTTCTTGCACAATGTGTTCCTCTTGCGACAATCCATGTAATCCTGTCCCATCTTC  250

Query  240  TTA--CT-CTCCTCCTCCTCCGCCTTCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC  296
            |||  || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  251  TTACTCTCCTCCTCCTCCTCCGCCATCAAGCTCCGGTGGCGGTGGATCTTATTATTACTC  310

Query  297  TCCTCCTCCTCCTTCAAGCTCCGGTGGTGCTAAATACCCGCCTCCGTACGGTGGCGACGG  356
            ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  311  TCCTCCTCCTCCTTCAAGCTCCGGTGGTGTTAAATACCCGCCTCCGTACGGCGGCGACGG  370

Query  357  ATACGGTGGACAAGGCTACTATTATCCGCCTCCTTACTACGGCAATTACGGGACACCACC  416
             |||||||| |     || | | |||||||||||||||||||||||||||||||||||||
Sbjct  371  CTACGGTGG-C-----TA-T-T-ATCCGCCTCCTTACTACGGCAATTACGGGACACCACC  421

Query  417  ACCGCCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCACACTCCTCCTCAGGGAAA  476
            ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  422  ACCACCGAATCCGATCGTTCCTTATTTTCCGTTTTACTATCATACTCCTCCTCAGGGATA  481

Query  477  TTCTGGTTCGGCTCGCTTACATGA-TTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT  535
            ||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct  482  TTCAGGCTCGGCTCGTTTACA-GAATTCTCTCCTCTTTGCTCTGTTCGCCGTCTTGCTCT  540

Query  536  GTTTTGTGTAACGGAGATTCATCTGTATTTAGCCGGGAAA  575
            ||||||||| |||| ||||||||||||||| |||||||||
Sbjct  541  GTTTTGTGTGACGGCGATTCATCTGTATTTGGCCGGGAAA  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30944234552


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5