BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478080
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07565.4 | Symbols: | Protein of unknown function (DUF3755)... 1615 0.0
> AT3G07565.4 | Symbols: | Protein of unknown function (DUF3755)
| chr3:2413640-2416128 FORWARD LENGTH=1246
Length=1246
Score = 1615 bits (874), Expect = 0.0
Identities = 1132/1245 (91%), Gaps = 64/1245 (5%)
Strand=Plus/Plus
Query 1 GAAGAAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAAtctctccatc-tctctctc-ct- 57
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 6 GAAGCAGAAGAAGAAGCTCAGTCGGCGGCCGGATTAATCTCCCCATCATCTCTCTCTCTC 65
Query 58 --tctctctGTTCCTATCCCGGCGAATTCATATCAGAATTGCCCCAAAATTCAAAC-TTT 114
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 66 CCTCTCTCTGTTCCTATCCCGGCGAATTCATATCTGAATT-TCCCAAAATTCAAACTTTT 124
Query 115 CCGGTGAAATTATTTTAGGAAACCAAAGTGGCTT-TTTAGCTCGAAAAATTGGGTATTTG 173
|||||| ||||||||||||||||| ||||| ||| || ||||| |||||||||||||||
Sbjct 125 CCGGTGGAATTATTTTAGGAAACC-AAGTGACTTCTTAAGCTCCAAAAATTGGGTATTTA 183
Query 174 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCTTCGGCTACACAGAAG 233
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 184 ATGGCGGCGAGCGCGAACCCGTCGGGGAACAATCAGGAAGGTTCGTCGGCGACGCAGAAG 243
Query 234 GTATCGTCTTCTTCAGCGGCGGCTACGAATGGCGCAGCTGTGAATTCGGTCGATAA---T 290
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |
Sbjct 244 GTATCGTCTTCTTCAGCGGCGGCGGCGAATGGCGCTGCTGTGAATTCCGTCGATAATGGT 303
Query 291 GG---T-----------GGC----AA--CGCAGGCG-TTGGCGCGTTGAGGCATAATCCT 329
|| | ||| || | ||| || ||||||||||||||||||||||
Sbjct 304 GGAAATACAGGCGCGGCGGCGGATAATTCACAGACGATTGGCGCGTTGAGGCATAATCCA 363
Query 330 GGGATCTCTACCGATTGGACTCATGAGGAACAATCTCTATTGGAAGATTTACTTGTCAAG 389
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 364 GGGATCTCTACCGATTGGACTCTTGAGGAACAATCTCTATTGGAAGATTTGCTTGTCAAG 423
Query 390 TACGCGACCGAACCTTCGGTTTTTCGATATGCGAAGATTGCGATGAAAATGAAGGATAAG 449
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 424 TACGCGACAGAACCGTCGGTTTTTCGATATGCGAAGATTGCTATGAAAATGAAAGATAAG 483
Query 450 ACTGTTCGAGATGTTGCGCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 ACTGTTCGAGATGTTGCCCTGCGCTGTAGATGGATGACTAAAAAGGAAAACGGAAAGCGT 543
Query 510 AGGAAAGAAGACCATTCGTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAG 569
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGGAAAGAAGATCATTCCTCGAGGAAAAGCAAAGATAAGAAACAGGAAAAAGCTACAGAT 603
Query 570 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTGCATCCTAATGGTCCTTCTTATGCTCCA 629
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 604 TCTTCAGCCAAGTCCTCATCTCATTTGAATGTTCATCCTAATGGTCCTTCTTATGCTCCG 663
Query 630 CCTATGATGCCTATCGATACTGATGATGGTATTTCGTATAAAGCTATTGGTGGTGTGAGT 689
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 664 CCTATGATGCCTATCGATACTGATGATGGTATTTCATATAAAGCTATTGGTGGTGTGAGT 723
Query 690 GGAGATCTTCTCGAGCAAAATGCTCAAATG-T---TCAA---T---C-AAGTT-TCA--- 734
|||||||||||||||||||||||||||||| | |||| | | || || |||
Sbjct 724 GGAGATCTTCTCGAGCAAAATGCTCAAATGTTCAATCAACTTTCAACAAATTTCTCAGCT 783
Query 735 -T-CA----AATT--TC-T-CAGC-TTTC--CAGCTACATGAGAATGTCAATATCTTGTG 781
| || |||| | | || | |||| | ||||||||||||||||||||||||||
Sbjct 784 TTCCAGGTGAATTCAACTTCCA-CTTTTCATCTTCTACATGAGAATGTCAATATCTTGTG 842
Query 782 CAAAGCTCGGGACAATATCCTCGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 841
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 843 CAAAGCTCGAGACAATATCCTTGCAATCTTGAACGACTTGAATGACATGCCAGAAGTTAT 902
Query 842 GAAGCAGATGCCACCTCTTCCGGTGAAGGTGAATGAGGAGCTGGCAAACTCGATTCTCCC 901
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct 903 GAAGCAGATGCCACCTCTTCCGGTGAAGTTGAATGAGGAGCTGGCAAATTCGATCCTCCC 962
Query 902 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGTCGACCTATGGTTGGTTCTGACCAAGG 961
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 963 TCGCCCATCCCATCAAAGGAAGTCATGATCGAGGCGATAGATGGTTGGTTCTGACCAAGG 1022
Query 962 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AGTCTCTTTAATCCGGGATCAATGAAGAAAGGAATAAATCGCGGGATAGAGAGAGAGCTC 1082
Query 1022 CAGTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1081
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CACTCGTACTGGTTGATAGAATGAGGGGTTTCCCCTGACTCATAGAGTTATAGTCTCTTT 1142
Query 1082 T-ACAATTTCTGTCAGTCTATGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1140
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTACAATTTCCGTCAGTCTCTGAATGTTTTAGCAAATGGTTAATTGATACATGAGTAGGG 1202
Query 1141 TCGCATATCGTTTGTTTAGGATGTGAATAGATTTCAATTGGTATG 1185
|||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1203 TCGCGTATCGTT-GTTTAGGATGTGAATAGATTTCAATTGGTATG 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5