BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478093
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07640.1 | Symbols: | unknown protein; Has 27 Blast hits to... 1131 0.0
> AT3G07640.1 | Symbols: | unknown protein; Has 27 Blast hits
to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:2438132-2439883 FORWARD
LENGTH=987
Length=987
Score = 1131 bits (612), Expect = 0.0
Identities = 750/815 (92%), Gaps = 15/815 (2%)
Strand=Plus/Plus
Query 1 ATGAAAGTAGCGGAGAAGATTGTTATCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 40 ATGAAAGTAGCGGAGAAGATTGTTTTCCTCTGGAATGATTCCGATGGATTTGCTGCAACC 99
Query 61 ATTGCTGATGCTTTAAACCCTAACCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 120
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 100 ATTTCTGATACTTTAAACCCTAGCCCTAGTTCCCCTCTTCGCAAACTAGAAGAACAGATC 159
Query 121 CACCTTCCGTTGGATAAGTATGGTGTCGAAGGTGCGGAAACCGGCGGGAGTATCGTTCAT 180
|| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 160 CAGCTTCCGTTGGATAAGTATGGCGTTGAAGGTGTGGAAACCGGCGGGAGTATCGTTCAT 219
Query 181 TTCGTCGATGAGAATGGAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGCTATGAGCCT 240
||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 220 TTCGTAGATGAAAATGAAGTTTATCAGGTCTCGATTTTTCTTCTTCGAAGTTATGAGCCT 279
Query 241 CCACTACTAGTGTGTGCTATGAATGAACTGCTGGACCGAATTACAAGGGAAGCGTCAAGC 300
||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 280 CCAGTACTAGTGTGTGCTATGAATGAACTGCTGGACCTAATTACAAGGGGATCGTCAA-C 338
Query 301 -CTACCCACAATTGTAGCTCCTTTTC-TTGTGGCGTCATCTAAGCTTAAGTTCAATAACA 358
||||||||||| ||||||| |||| |||||||| |||||||||| |||||||||||||
Sbjct 339 TCTACCCACAATCATAGCTCC-TTTCTTTGTGGCGGCATCTAAGCTCAAGTTCAATAACA 397
Query 359 GAT-CCTATGAAGCAAATAGCAGAACAGCTAGTCTTCACTACGTTCAAGTTGGGCCAGAA 417
||| ||| |||||||||| ||||| |||||||||||| ||||||||||||| |||||
Sbjct 398 GATCCCT-GGAAGCAAATAACAGAAAAGCTAGTCTTCATTACGTTCAAGTTGCTACAGAA 456
Query 418 ACAGAGATCAGTAGGCTATTTGCTTCTCGCATCGAGAAACCACCGCCATTGATGCAGATC 477
||||||| ||||||| |||||||||||||||||||||||||||| | || ||||||||||
Sbjct 457 ACAGAGACCAGTAGGTTATTTGCTTCTCGCATCGAGAAACCACCACTATCGATGCAGATC 516
Query 478 CATTATGAACCTTTGTCATGCTTGCTCCACCTAGCTCGTGTTAAACGCCTGCCTACCTCT 537
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 517 CATTATGAACCTTTGTCATGCTTGCTTCATCTAGCTCGTGTTAAACGCCTGCCTACCGCT 576
Query 538 ATTCTCATTGGGCAAAGAAGTAGTAGCCTATCTCATAAAGCTCTAGATC-AAGACCTTCA 596
|||||||| || |||||||| | ||||||| |||||||||||||||| | |||| |||||
Sbjct 577 ATTCTCATAGGCCAAAGAAGCAATAGCCTAACTCATAAAGCTCTAGA-CGAAGAGCTTCA 635
Query 597 GGTGATACATGAAACAGGGGAGCTTC-TGGCCAGTTGGACCGGACTGTCTTTCTCAAGAG 655
|||||| |||||||||||||||| || |||| |||||||| |||||||||||||||||||
Sbjct 636 GGTGATCCATGAAACAGGGGAGC-TCGTGGCTAGTTGGACAGGACTGTCTTTCTCAAGAG 694
Query 656 ACAGAATCAAGTGGAGCGCAAAAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 715
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACAGAATCAAGTGGAGCGCATCAAAGACATCAAAAGAAGAAGAAAGTCCGTGGCGTGCTC 754
Query 716 TTTATGGTTAATCTTCACAGGTCAGGTCAGGTCTTTTTCATGGCCTAACACTGCTACAGT 775
||||||| |||||||||||||||||||| | |||| ||||||| ||||||||||||||
Sbjct 755 TTTATGGCTAATCTTCACAGGTCAGGTC---T-TTTT-CATGGCCCAACACTGCTACAGT 809
Query 776 CTTTGCTTGGACCTGCACTAAATTTCCCTGTTGTA 810
||||||||||||||||| ||||||||||| |||||
Sbjct 810 CTTTGCTTGGACCTGCAGTAAATTTCCCTATTGTA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5