BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478095
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07650.1 | Symbols: COL9 | CONSTANS-like 9 | chr3:2441657-24... 2002 0.0
AT5G48250.1 | Symbols: | B-box type zinc finger protein with C... 350 3e-95
> AT3G07650.1 | Symbols: COL9 | CONSTANS-like 9 | chr3:2441657-2444532
FORWARD LENGTH=1962
Length=1962
Score = 2002 bits (1084), Expect = 0.0
Identities = 1343/1462 (92%), Gaps = 42/1462 (3%)
Strand=Plus/Plus
Query 1 AGAAGCACaagaagaagaagaagaagaagTTCTGGAATA---ATTATCGTCTCTGTTTCT 57
||||| | ||||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 42 AGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTCTGGAATAGTCATCATCTTCTCTGTTTCT 101
Query 58 AGGGTTTGTTTATTTCTCTCTAAAGTTTCTGGATTCAACTTCTGAAGAAGATCTTTTTA- 116
||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 102 AGGCTTTGTTTATTTGTCTCTAAAGTTTCTGGATTCAACTTCTGAAGAAGATAGTAGTAG 161
Query 117 T--TTATTAACTTTTTTGGACAGCAGAAAGTTTATTTGGTCAGAGTGAAGGAAGATGGGT 174
| | || | || | | |||||| |||||||||||| |||||||||||||
Sbjct 162 TCCACAAGAAGGATCTT---CTTTACAAAGTTGATTTGGTCAGAGCCAAGGAAGATGGGT 218
Query 175 TACATGTGTGACTTCTGTAGTGAACAAAGATCTATGGTGTACTGTCGATCCGATGCAGCT 234
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TACATGTGTGACTTCTGTGGTGAACAAAGATCTATGGTGTACTGTCGATCCGATGCAGCT 278
Query 235 TGTCTGTGTCTCTCCTGTGACCGGAGTGTTCATTCTGCTAATGCATTGTCCAAACGACAT 294
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 279 TGTTTGTGTCTCTCCTGTGACCGGAGTGTTCATTCCGCTAATGCATTGTCCAAACGACAT 338
Query 295 TCTCGGACACTTGTCTGCGAGAGATGCAATGCTCAGCCTGCTACAGTCAGATGTGTTGAA 354
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 339 TCTCGGACACTTGTCTGCGAGAGATGCAATGCTCAGCCTGCTACTGTCAGGTGTGTTGAA 398
Query 355 GAAAGGGTCTCACTCTGTCAAAACTGTGACTGGTCTGG---------C--C-ACAACAAC 402
|||||||| ||||||||||||||||||||||||||||| | | ||||||||
Sbjct 399 GAAAGGGTTTCACTCTGTCAAAACTGTGACTGGTCTGGCCACAACAACAGCAACAACAAC 458
Query 403 AATTCTTCTTCTTCTTCTACTTCGCCGCAGCAGCATAAGAGGCAAACCATAAGTTGCTAT 462
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 AATTCTTCGTCTTCTTCTACTTCGCCGCAGCAGCATAAGAGGCAAACCATAAGTTGCTAT 518
Query 463 TCGGGTTGCCCTTCGAGCTCAGAACTAGCCTCCATTTGGTCCTTCTGTTTGGACTTAGCC 522
|||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 519 TCGGGTTGCCCTTCCAGCTCAGAACTCGCTTCCATTTGGTCTTTCTGTTTGGACTTAGCT 578
Query 523 GGACAATCCATTTGTGAACAAGAAATGGGTATGATGAATATAGACGATGATGGTCCTACC 582
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 579 GGACAATCTATTTGTGAACAAGAACTGGGTATGATGAATATAGACGATGATGGTCCTACC 638
Query 583 GACAACAAAAATTGTAATGAGGATAAGAAAGATGTC-T--TT-G----T-TTCAATTCCT 633
||||| |||| ||||||||||||||||||||||||| | || | | ||||||||||
Sbjct 639 GACAAGAAAACTTGTAATGAGGATAAGAAAGATGTCTTGGTTGGATCCTCTTCAATTCCT 698
Query 634 GAAACCAGTTCTGCAGCACAAGGAAAGTCATCTTCTGCTAAGGATGTTGGAGTCTGTGAA 693
||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 699 GAAACCAGTTCTGTACCACAAGGAAAATCATCTTCTGCTAAGGATGTTGGAATGTGTGAA 758
Query 694 GATGACTTCTACGGGAACCTTGGTATGGATGAAGTTGACATGGCACTTGAGAACTATGAA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GATGACTTCTACGGGAACCTTGGTATGGATGAAGTTGACATGGCACTTGAGAACTATGAA 818
Query 754 GAGCTCTTTGGTACCGCCTTTAACCCCTCGGAAGAGCTATTTGGGCATGGTGGAATCGAT 813
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 819 GAACTCTTTGGTACCGCCTTTAACCCCTCTGAAGAGCTATTCGGGCATGGTGGAATCGAT 878
Query 814 AGTCTTTTCCAGAAGCACCAAACAAAAGCTCCAGAGGGAGGGAATTCGGTGCATCCAGCT 873
|| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 879 AGCCTTTTCCATAAGCACCAAACA---GCTCCAGAGGGAGGGAATTCGGTGCAGCCAGCA 935
Query 874 GGCAGTAATGATTCGTTCATGAGTTCGAAAACTGAGCCAATAATTTGCTACACATCGAAG 933
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 936 GGCAGTAATGATTCGTTCATGAGTTCGAAAACTGAGCCAATAATTTGCTTCGCATCGAAG 995
Query 934 CCAGCACATTCGAACATATCGTTCTCTGGAGTCACTGGAGAAAGTAGTGCTGGAGATTTC 993
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 996 CCAGCACATTCGAACATATCCTTCTCTGGAGTCACTGGAGAAAGTAGTGCTGGAGATTTC 1055
Query 994 CAAGAATGTGGTGCATCATCTTCGATACAGCTCTCGGGCGAGCCACCATGGTATCCTCCA 1053
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1056 CAAGAATGTGGTGCATCATCTTCCATACAGCTCTCGGGGGAGCCACCATGGTATCCTCCA 1115
Query 1054 ACATCT-CAAGAAAATAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCG 1112
|||| | || || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 ACAT-TACAGGATAACAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCG 1174
Query 1113 ATACAAGGAAAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATGCTTCTCGCAA 1172
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1175 TTACAAGGAGAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATGCTTCCCGCAA 1234
Query 1173 AGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGAGATTTGTCAAAGCTGGTGAAGCTTA 1232
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1235 AGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGCGATTTGTCAAAGCTGGTGAAGCTTA 1294
Query 1233 TGATTACGACCCCCTCACCCCAACCAGAAGCTATTGAGGAGTC-TAATTGAAAGGTaaaa 1291
|||||||||||| ||||||||||||||||| |||||| || || | |||||||||| |
Sbjct 1295 TGATTACGACCCTCTCACCCCAACCAGAAGTTATTGAAGACTCCTT-TTGAAAGGTACAT 1353
Query 1292 aaaaGGTAGATACACATGGCGAAGAATCGAACAAGAAAGGTTTTTGACTTATGGGTAGTT 1351
| | || ||| ||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1354 AGA---TATATATACATGGCGAAGAATCGAACAAGAAAGGTTTT-GACTTATGGGCAGTT 1409
Query 1352 TCAAGTGAGCAACTTGGAAAATTGTGGGTTAGTAACAAAACAAGACTACTCTAGCATGAA 1411
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1410 TCAAGTGAGCAACTTGGAAAATTGTGGGTTAGTAACAAAACAAGACTACTGTAGCATGAA 1469
Query 1412 CAGATT-CAAGACTGACTCTTG 1432
|||||| |||||||||||||||
Sbjct 1470 CAGATTTCAAGACTGACTCTTG 1491
Score = 248 bits (134), Expect = 1e-64
Identities = 178/196 (91%), Gaps = 15/196 (8%)
Strand=Plus/Plus
Query 1432 GCGTCT--CACTGATCAGGGTTCCATGAATTTTGTTCTTCTC-T-GTAGTTAAAAAGGCA 1487
|||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1616 GCGTCTCACACTGATCAGGGTTCCATGAATTTTGTTCTTCTCTTGGTAGTTAAAAAGGCA 1675
Query 1488 --G--GGAGATTTAGAGTAA-TTAAACAATATGTGATTGTTGTGTATGCCTTTCTATTTG 1542
| ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 1676 GGGAAGGAGATTTAGAGTAATTTAAACAATATGTGATTGTTGTATATGCCTTTGTATTTG 1735
Query 1543 TTTGTTGTATACTCATAAATGCTTTTTTCTGTTTTGTACTCGGGCATTCTTGTAAATTAA 1602
||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1736 TTTGT---ATACTCATAAATG-TTTTT-CTGTTTTGTACTCGG-CATTCTTGTAAATTAA 1789
Query 1603 AAACATTATCCACATT 1618
| ||||||||||||||
Sbjct 1790 AGACATTATCCACATT 1805
Score = 115 bits (62), Expect = 1e-24
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1630 ACTAGTTCAAGTTTAAGGAGATTTTGGTTTGTAGCAACTTCAAGAGGTTGATCCAACAAT 1689
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1874 ACTAGTTCAAGTTTAACGAGATTTTGGTTTGTAGTAACTTCAAGAGGTTGATCCAACAAT 1933
Query 1690 GAGACAATGCCAAA 1703
||| |||||| |||
Sbjct 1934 GAGGCAATGCAAAA 1947
> AT5G48250.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr5:19561319-19563722 REVERSE LENGTH=1704
Length=1704
Score = 350 bits (189), Expect = 3e-95
Identities = 496/635 (78%), Gaps = 58/635 (9%)
Strand=Plus/Plus
Query 670 GCTAAGGATG-TTGGAGTCTGTGAAGATGACTTCTACGGGAACCTTGGTAT-GGATGAAG 727
|||||||| | ||||||| ||||| ||||||||| | || || | | | | |||||||
Sbjct 699 GCTAAGGA-GCTTGGAGTATGTGAGGATGACTTCAATGGAAATC-TCATTTCAGATGAAG 756
Query 728 TTGACATGGCACTTGAGAACTATGAAGAGCTCTTTGGTACCGCCTTTAACCCCTCGGAAG 787
| ||| |||| ||||||||||||||||| ||||||||| | ||||| ||| | || |||
Sbjct 757 TAGACTTGGCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATC--AAG 814
Query 788 --AGCTATTTGGGCATGGTGGAA-TCGATAGTCTTTTCCAGAAGCACCAAACA-AAAGCT 843
| || || | ||| ||||||| | || |||||||| | | || ||| | |||||
Sbjct 815 ATATCTCTTCGAGCACGGTGGAATTGGA-AGTCTTTT-C-G-AG----AAAGATGAAGCT 866
Query 844 CCA-GAGGGAGGGAATTCGGTGCATCCAGC--T-GGCAGT-A---A--T---GATTCGTT 890
|| ||||| || | | ||| ||||| | ||| | | | | ||||||||
Sbjct 867 -CATGAGGG-CTCAA-T-GCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTT 922
Query 891 CATGAGTTCG-AAAACTGAGCCAATAATTTGCTACACATCGAAGCCAGCACATTCGAACA 949
||||| || | | ||| ||||||||||||||||| |||| ||||||||||||||||| |
Sbjct 923 CATGACTT-GTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATA 981
Query 950 TATCGTTCTCTGG-AGTCACTGGAGAAAGTAGTGCTGGAGATTTCCAAGAATGTGGTGCA 1008
| || |||||||| | ||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 982 TCTCCTTCTCTGGCA-TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCG 1040
Query 1009 TCATC-TTCGATA-CAGCTCTC-GGGCGAG-C-C-ACCATGGTATCC-TCCAACATCTCA 1061
||||| | || | ||||| || || ||| | | |||||||| || ||||||| | ||
Sbjct 1041 TCATCGAT-GA-AGCAGCTTTCAAGG-GAGCCACAACCATGGT-GCCATCCAACAGCACA 1096
Query 1062 AGAAAATAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCGATACAAGGA 1121
|| | || ||| | ||||||| || ||| ||||||||||| |||||||| ||||||||
Sbjct 1097 GGACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGA 1156
Query 1122 AAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATG-CTTCTCGCAAAGCAAGAG 1180
|||||||||||||||||||||||| ||| |||| ||||||| || || | |||| ||| |
Sbjct 1157 AAAGAAGAAGGCTCGCAAGTTTGACAAGCGAGTAAGGTATGTCT-CTAGGAAAGAAAGGG 1215
Query 1181 CTGATGTGAGACGGCGTGT-AAAGGG-GAGATTTGTCAAAG-CTGGTGAAGCTTATGATT 1237
||||||||||||||||||| ||||| | | |||||||| | | ||||||||||||||||
Sbjct 1216 CTGATGTGAGACGGCGTGTGAAAGGACG-G-TTTGTCAA-GTCCGGTGAAGCTTATGATT 1272
Query 1238 ACGACCCCCTCACCCCAACCAGAAGCTATTGAGGA 1272
||||||| | | |||||| |||||||| ||||||
Sbjct 1273 ACGACCCGATGAGCCCAACAAGAAGCTACTGAGGA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5