BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478125
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07870.1 | Symbols: | F-box and associated interaction doma... 2420 0.0
> AT3G07870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:2510783-2512394 FORWARD LENGTH=1612
Length=1612
Score = 2420 bits (1310), Expect = 0.0
Identities = 1460/1531 (95%), Gaps = 16/1531 (1%)
Strand=Plus/Plus
Query 6 tcttcttcttcttcttcctcttctctctctctccatctcgagatcaaaaactcttgcttc 65
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 15 TCTTCTTCTTCTTCTT-CTCCTCTCTCTCTCTCCATCTCGATATCAAAAACTCTTGCTTC 73
Query 66 tgattctcttcATTCATGGCCTCAGAGAAGAGTTTCAAGAAGAGAAAGATCACCGATGAT 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 74 TGATTCTCTTCATTCATGGCTTCAGAGAAGAGTTTCAAGAAGAGAAAGATCACCGATGAT 133
Query 126 GTAGAC-g-g-aggaggaggaggaggaCTAGAATCCCTTCCCGGAGATATCATCGCCGAC 182
|||||| | | ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 134 GTAGACGGAGTAGGAGTAGGAGGAGGACTAGAATCCCTTCCCGAAGATATCATCGCCGAC 193
Query 183 ATATTCTCTCGGCTACCAATCTCCTCCATAGCTCGGCTTATGTTCGTTTGCAGATCTTGG 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 ATATTCTCTCGCCTACCAATCTCCTCCATAGCTCGGCTTATGTTCGTTTGCAGATCTTGG 253
Query 243 AGATCAATTTTGACTCAACACGGTCG--TGTC-TCTTCTTCTTCTTCCCCGACAAAGCCA 299
||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 254 AGATCTGTTTTGACTCAACACGGTCGTCTCTCTTCTTCTTCTTCTTCCCCGACAAAGCCA 313
Query 300 TGTCTTCTCCTTCACTGCGATTCCCCAATACGCAACGGTCTTCACTTCCTCGACTTATCA 359
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 314 TGTCTTCTCCTTCACTGCGATTCGCCAATACGCAACGGTCTTCACTTCCTCGACCTATCA 373
Query 360 GAAGAAGAGAAACGCATCAAGACCAAGAAATTCACATTAAGATTCGAATCTTCCATGCCG 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 374 GAAGAAGAGAAACGCATCAAGACCAAGAAATTCACATTAAGATTCGCATCTTCCATGCCG 433
Query 420 GAGTTCGACGTGGTAGGATCTTGTAACGGTTTGCTCTGTTTGTCTGATTCTCTCTACAAC 479
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GAGTTTGACGTGGTAGGCTCTTGTAACGGTTTGCTCTGTTTGTCTGATTCTCTCTACAAC 493
Query 480 GATTCACTCTACCTCTACAATCCTTTTACTACAAACTCCTTAGAGCTCCCCGAATGTTCC 539
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 494 GATTCACTCTACCTTTACAATCCTTTTACTACAAACTCCTTAGAGCTTCCCGAATGTTCC 553
Query 540 AACAAGTACCACGACCAAGAACTTGTGTTCGGTTTCGGATTCCATGAGATGACAAAAGAA 599
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 554 AACAAGTACCACGACCAAGAACTTGTCTTCGGTTTTGGATTCCATGAGATGACAAAGGAA 613
Query 600 TACAAAGTGTTGAAGATAGTTTACTTCAGAGGTAGTAGTAGTAGCAATAACGGTATTTAC 659
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 614 TACAAAGTTTTGAAGATAGTTTACTTCAGAGGTAGTAGTAGTAACAATAACGGTATTTAC 673
Query 660 AGAGGTCGTGGTAGAATCCAGTACAAGCAATCAGAGGTTCAGATCTTAACCTTGTCATCT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGAGGTCGTGGTAGAATCCAGTACAAGCAATCAGAGGTTCAGATCTTAACCTTGTCATCA 733
Query 720 AAAACAACAGATCAATCTTTGTCTTGGAGAAGCTTAGGCAAAGCTCCTTATAAGTTTGTG 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 734 AAAACAACAGATCAATCTTTGTCCTGGAGAAGCTTAGGCAAAGCTCCTTATAAGTTTGTG 793
Query 780 AAACGTTCGTCGGAGGCTTTGGTCAACGGGAGGTTACATTTTGTGACAAGGCCTCGTAGG 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 AAACGTTCATCGGAGGCTTTGGTCAACGGGAGGTTACATTTTGTGACAAGGCCTCGTAGG 853
Query 840 CACGTGCCGGATCGTAAGTTCGTGTCTTTTGATCTTGAAGATGAAGAGTTTAAAGAGATT 899
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 854 CACGTGCCGGATCGTAAGTTTGTATCATTTGATCTTGAAGATGAAGAGTTTAAAGAGATT 913
Query 900 CCTAAACCAGACTGCGGTGGGCTAAACCGGACAAACCATAGACTAGTGAACCTTAAAGGG 959
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 914 CCTAAACCAGACTGTGGTGGTCTAAACCGGACCAACCATAGACTAGTGAACCTTAAAGGG 973
Query 960 TGTCTTTGTGCAGTCGTTTATGGTAACTATGGAAAATTAGACATATGGGTGATGAAGACT 1019
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 974 TGTCTTTGCGCGGTCGTTTATGGTAACTATGGAAAATTAGACATATGGGTTATGAAGACT 1033
Query 1020 TATGGAGTCAAAGAATCATGGGGAAAAGAGTATAGCATTGGGACTTACTTGCCGAAGGGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 TATGGAGTCAAAGAATCATGGGGAAAAGAGTATAGCATTGGGACTTACTTGCCAAAGGGG 1093
Query 1080 CTAAAGCAGAATCTGGACCGACCCATGTGGATTTGGAAGAACGCTGAGAATGGTAAAGTG 1139
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1094 CTAAAGCAAAATCTGGACCGACCAATGTGGATTTGGAAGAACGCTGAGAATGGTAAAGTG 1153
Query 1140 GTTCGGGTTTTATGTTTGTTGGAGAATGGAGAGATCTTGTTGGAGTATAAGAGTAGGGTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GTTCGGGTTTTATGTTTGTTGGAGAATGGAGAGATCTTGTTGGAGTATAAGAGTAGGGTT 1213
Query 1200 CTTGTGGCATATGATCCAAAATTGGGTAAATTTAAAGATCTTCTTTTCCATGGTTTGCCT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1214 CTTGTGGCATATGATCCAAAATTGGGTAAATTTAAAGATCTTCTTTTCCATGGGTTGCCT 1273
Query 1260 AATTGGTTTCACACTGTTGTCCATGTTGGAACATTGTCTTGGTTTGATACACCCCTTGAT 1319
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1274 AATTGGTTTCACACTGTTGTTCATGCTGGAACATTGTCTTGGTTTGATACACCCCTTGAT 1333
Query 1320 TTATGGTAAATTAAATAAAGTTTTCAAATTTTATTACATTTAGAGTTTTGAGAAATGGGT 1379
|||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 1334 TTATGGTAAAATAATTAAAGTTTTGAATTTTTATTACATTTAGAGTTTTGAGATTTGGGT 1393
Query 1380 ACATCTTCTTGCCCCCTTTCCATACCAACTAAGTTCATTCtttttt---tAATGGGTAGA 1436
||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||
Sbjct 1394 ACATCTTCTTGCCCCCTTTACATACCAACTAAGTACATTCTTTTGTACGTAATGGGTAGA 1453
Query 1437 TTAAGTTGTATTTCTTTTCGAGTTCTTAATTGTTTCGTTTCTGTTCAATTTATGGGTTCT 1496
||||| ||||||||||||| ||||||| |||||||||||||| ||||||| |||||
Sbjct 1454 TTAAGGTGTATTTCTTTTCAAGTTCTT----GTTTCGTTTCTGTTGAATTTATAGGTTCC 1509
Query 1497 TTTTCATGCCATCTGGTTAAATGTAAATATA 1527
|||||||| | || ||| |||||||||||||
Sbjct 1510 TTTTCATGTCTTC-GGT-AAATGTAAATATA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5