BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478172
Length=731
Score E
Sequences producing significant alignments: (Bits) Value
AT3G08690.1 | Symbols: UBC11, ATUBC11 | ubiquitin-conjugating e... 1153 0.0
AT3G08700.1 | Symbols: UBC12 | ubiquitin-conjugating enzyme 12 ... 479 2e-134
AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 ... 76.8 3e-13
> AT3G08690.1 | Symbols: UBC11, ATUBC11 | ubiquitin-conjugating
enzyme 11 | chr3:2641056-2642688 FORWARD LENGTH=835
Length=835
Score = 1153 bits (624), Expect = 0.0
Identities = 704/741 (95%), Gaps = 12/741 (2%)
Strand=Plus/Plus
Query 1 CTTTGCACTCAATTTTTATTCTCGATTCTCTCCTCTCCCGATATAGAAGCTCTCGCTTTG 60
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 90 CTTTGCACTCCATTTTTATTCTCGATTCTCTTCTCTCCCGATAAAGAAGCTCTCGCTTTG 149
Query 61 TGGTGTCCGTCCTTCTTCCAGGTTTTCTCTCTCTCTGACGCATGGCTTCTAAGAGGATTT 120
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 150 TGTTGTCCGTCCTTCTTCCAGGTTTTCTC-GTCTCTGACGCATGGCTTCTAAGAGGATCT 208
Query 121 TGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGTCCTGTGG 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 209 TGAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGGTCCGGTGG 268
Query 181 CTGAGGACATGTTCCACTGGCAAGCAACTATCATGGGACCTCCTGAAAGTCCGTATGCCG 240
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 269 CTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCG 328
Query 241 GAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGG 388
Query 301 TGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 TGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGTATTTGCCTTG 448
Query 361 ATATTTTGAAAGAGCAATGGAGTCCTGCTCTTACTATATCCAAGGTTCTGTTGTCGATTT 420
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 449 ATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGGTTCTGTTGTCGATTT 508
Query 421 GCTCGCTGCTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCATATGT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 509 GCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGT 568
Query 481 ACAAGACAGATAGATCCAAGTACGAGTCAACTGCGAGAAGCTGGGCACAAAAGTACGCAA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 569 ACAAGACAGATAGATCCAAGTACGAGTCAACTGCGAGAAGCTGGACACAAAAGTACGCAA 628
Query 541 TGGGTTGATGATA-A-GACAAAGCAAAGGATATGTTATTGCGCATGGGAATAAAATTaa- 597
||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 629 TGGGTTGATGATATAAGACAAAGCAAAGGATATGTTATTGCGCATCGGAATAAAAT-AAT 687
Query 598 aa---aaaaaaaaTGCACTTGTTTGGTTTAGCAAACGTTATCATGTAT-GAACAACTTAG 653
|| ||||||||||||||||||||||||| ||||||||| || |||| |||||||||||
Sbjct 688 AACTTAAAAAAAATGCACTTGTTTGGTTTATCAAACGTTAGCAAGTATCGAACAACTTAG 747
Query 654 TTGCTCTTAGTCCTCTTCTGTTCTGATCGCTATAAACTA-T-TTA-TTTCGATTTTTGGG 710
|||||||| |||||||||||||||||| |||||||||| | ||| |||||||| |||||
Sbjct 748 CTGCTCTTACTCCTCTTCTGTTCTGATCACTATAAACTAGTATTAATTTCGATTGTTGGG 807
Query 711 TCTACTTTTACTCTCTTGTTT 731
|||||||||| ||||||||||
Sbjct 808 TCTACTTTTATTCTCTTGTTT 828
> AT3G08700.1 | Symbols: UBC12 | ubiquitin-conjugating enzyme 12
| chr3:2643482-2644545 FORWARD LENGTH=450
Length=450
Score = 479 bits (259), Expect = 2e-134
Identities = 390/453 (86%), Gaps = 9/453 (2%)
Strand=Plus/Plus
Query 102 ATGGCTTCTAAGAGGATTTTGAA-GGAGCTCAAGGATCTCCAGAAG-GATCCTCCTTCAA 159
|||||||||||||||| ||| || ||| || | |||| | ||| || ||||||| |||
Sbjct 1 ATGGCTTCTAAGAGGA-TTTCAAGGGAACTGAGGGATATGCAG-AGACATCCTCCAGCAA 58
Query 160 ACTGCAGCGCTGGTCCTGTGGCT---GAGGACATGTTCCACTGGCAAGCAACTATCATGG 216
|||| ||||| |||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 59 ACTGTAGCGCAGGTCCTGTGGCTGAGGAGGACATATTCCATTGGCAAGCAACTATCATGG 118
Query 217 GACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGG 276
|||| | ||| ||||||||| ||||||| || ||| |||||||||| ||||| || |||
Sbjct 119 GACCGCATGACAGTCCGTATTCCGGAGGCGTATTTACGGTTTCTATTGATTTCTCTTCGG 178
Query 277 ATTATCCTTTCAAGCCACCAAAGGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCA 336
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 179 ATTATCCTTTCAAGCCACCAAAGGTGAATTTCAAGACTAAGGTGTACCACCCAAACATCG 238
Query 337 ATAGCAATGGAAGTATTTGCCTTGATATTTTGAAAGAGCAATGGAGTCCTGCTCTTACTA 396
| ||||| ||||| ||||||||||| || ||||||||||||||||||||||||| ||| |
Sbjct 239 ACAGCAAAGGAAGCATTTGCCTTGACATATTGAAAGAGCAATGGAGTCCTGCTCCTACCA 298
Query 397 TATCCAAGGTTCTGTTGTCGATTTGCTCGCTGCTGACTGACCCAAACCCAGATGATCCTC 456
|||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 299 CATCCAAGGTTTTGTTGTCGATTTGCTCGCTGCTGACTGACCCGAACCCAAATGATCCTC 358
Query 457 TTGTGCCGGAGATAGCTCATATGTACAAGACAGATAGATCCAAGTACGAGTCAACTGCG- 515
|||||||||||||||||||| | |||||| ||||| ||| || ||||||||||||||
Sbjct 359 TTGTGCCGGAGATAGCTCATCTCTACAAGGTAGATAAATCAAAATACGAGTCAACTGCAC 418
Query 516 AGAAGCTGGGCACAAAAGTACGCAATGGGTTGA 548
| || ||| |||| |||||||| ||||| |||
Sbjct 419 AAAAA-TGGACACAGAAGTACGCGATGGGATGA 450
> AT1G64230.4 | Symbols: UBC28 | ubiquitin-conjugating enzyme 28
| chr1:23833563-23835536 FORWARD LENGTH=1019
Length=1019
Score = 76.8 bits (41), Expect = 3e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 102 ATGGCTTCTAAGAGGATTTTGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCC 154
|||||||| || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCC 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35465307782
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5