BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478235
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein ... 1799 0.0
AT3G11250.1 | Symbols: | Ribosomal protein L10 family protein ... 1303 0.0
> AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:2823090-2825114 REVERSE LENGTH=1331
Length=1331
Score = 1799 bits (974), Expect = 0.0
Identities = 1114/1179 (94%), Gaps = 19/1179 (2%)
Strand=Plus/Plus
Query 1 GCTGATACCAAAACCCTAATTTCTTTACGTCAAACTCTCTC--TGCACAGAGTTAAATTG 58
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 GCTGATACCAAAACCCTAATTTCTTTACGTCAAACTCTCTCTATACACAGAGTTAAATTG 60
Query 59 AGTTTGTATCGTGGT-A-TTATCCTTTGAGCGAAAATGGTGAAAGCTACCAAAGCAGAGA 116
||||||| || | || | ||||||| |||||||||||||||||||| || || |||||||
Sbjct 61 AGTTTGTGTC-TCGTAACTTATCCTGTGAGCGAAAATGGTGAAAGCAACTAAGGCAGAGA 119
Query 117 AGAAGATCGCTTACGACACCAAGCTATGTCAGCTTATCGATGAGTACTCCCAGATCTTGG 176
|||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AGAAGATCGCCTACGATACCAAGCTATGTCAGCTTATCGATGAGTACACCCAGATCTTGG 179
Query 177 TCGTTGCGGCCGATAACGTCGGATCGACTCAGCTCCAGAACATCAGAAAGGGTCTTCGTG 236
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 180 TCGTTGCGGCCGATAACGTCGGATCAACTCAGCTTCAGAACATCAGAAAGGGTCTTCGTG 239
Query 237 GAGACTCCGTGGTGCTTATGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACT 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGACTCCGTCGTGCTTATGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACT 299
Query 297 CTGAGAACACTGGAAACACTGCAATCCTCAATCTGCTTCCTCTCCTTCAGGGAAACGTTG 356
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CTGAGAACACCGGAAACACTGCAATCCTGAATCTGCTTCCTCTCCTTCAGGGAAACGTTG 359
Query 357 GTTTGATCTTTACCAAAGGTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTTGATCTTTACCAAAGGTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGG 419
Query 417 TTGGTGCCCCTGCTCGTGTGGGTTTGGTTGCTCCAATTGATGTGGTTGTCCAACCTGGCA 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 TTGGTGCCCCTGCTCGTGTGGGTTTGGTGGCTCCAATTGATGTGGTTGTCCAACCTGGCA 479
Query 477 ACACTGGTCTCGACCCATCCCAGACATCTTTCTTCCAGGTTCTTAACATCCCAACCAAGA 536
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 480 ACACTGGTCTCGACCCATCCCAAACATCTTTCTTCCAGGTGCTTAACATCCCAACCAAGA 539
Query 537 TTAACAAGGGGACCGTCGAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGG 596
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTAACAAGGGTACCGTCGAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGG 599
Query 597 TCGGATCTTCTGAGGCTGCCCTTCTAGCCAAGCTTGGCATCAGGCCTTTCTCATATGGTC 656
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TCGGGTCTTCTGAGGCTGCGCTTCTAGCCAAGCTTGGCATCAGGCCGTTCTCATATGGTC 659
Query 657 TTGTTGTCCAGTCTGTGTATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTA 716
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGTTGTCCAGTCTGTCTATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTA 719
Query 717 CAGAAGACCAACTTGTTGAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTC 776
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTGAAGACCAACTTGTGGAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTC 779
Query 777 TTGCTATTTCTTATCCTACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGA 836
||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGCTGTGTCGTACCCTACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGA 839
Query 837 ATGCCTTAGCTATTGCTGTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGG 896
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGCCTTGGCTATTGCTGTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGG 899
Query 897 AATTCTTGAAGGATCCAAGTAAGTTTGCTGTTGCTGCAGTAGC--CG-TGTCTGCTGATG 953
||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||
Sbjct 900 AATACTTGAAGGATCCAAGCAAGTTTGCTGTTGCTTCAGTAGCTGCGGTGTCTGCTGATG 959
Query 954 CAGGTGGTGGTGGTGGTGCTCAAGCTGCTGCTAAGGTAGAGGAGAAGAAGGAAGAGTCAG 1013
|||||||||||| | || |||||||||||||||||||||||| | ||||||| |
Sbjct 960 CAGGTGGTGGTGCC----C-CA-GCTGCTGCTAAGGTAGAGGAGAAG--G-AAGAGTCCG 1010
Query 1014 ACGAAGAAGACTATG-AGGGTGGTTTTGGTTTGTTCGATGAAGAGTAGATTTTGTCTATT 1072
||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||| ||
Sbjct 1011 ACGAAGAAGACTATGGAGG-TGATTTCGGTTTGTTCGATGAAGAGTAGATTTTGTCGGTT 1069
Query 1073 AAGGTCTTACCTTTTTGTCGTGGATTATAAGTGTTGCTTCGTTTTTAGTATGTTGGATCT 1132
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1070 AAGATCTTACCTTTTTGTCGTGGATTATAAGTGTTGCTTTGTTTTTAGTATGTTGGACCT 1129
Query 1133 CAATTTTCTTGGTTTTGGCCAATTCAGATTTATGTTACT 1171
|||||||||||||||| |||||| ||| |||||||||||
Sbjct 1130 CAATTTTCTTGGTTTTAGCCAATCCAGTTTTATGTTACT 1168
> AT3G11250.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:3521357-3523001 FORWARD LENGTH=1243
Length=1243
Score = 1303 bits (705), Expect = 0.0
Identities = 984/1116 (88%), Gaps = 30/1116 (3%)
Strand=Plus/Plus
Query 77 ATCCTTTGAGCGAA-AATGGTGAAAGCTACCAAAGCAGAGAAGAAGATCGCTTACGACAC 135
||||||||||| || ||||||||| || || ||||||||||||||||| || || |||||
Sbjct 82 ATCCTTTGAGC-AACAATGGTGAAGGCAACAAAAGCAGAGAAGAAGATAGCGTATGACAC 140
Query 136 CAAGCTATGTCAGCTTATCGATGAGTACTCCCAGATCTTGGTCGTTGCGGCCGATAACGT 195
|| ||||||||||||||||| || ||| | |||||||| ||||||||||| || |||||
Sbjct 141 AAAACTATGTCAGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGACAACGT 200
Query 196 CGGATCGACTCAGCTCCAGAACATCA-GAAAGGGTCTTCGTGGAGACTCCGTGGTGCTTA 254
||||||||||||||| |||||||||| |||| ||||||||||||||||| ||||| || |
Sbjct 201 CGGATCGACTCAGCTTCAGAACATCAGGAAA-GGTCTTCGTGGAGACTCAGTGGTTCTCA 259
Query 255 TGGGGAAGAACACTATGATGAAGCGTTCCGTTAGGATTCACTCTGAGAACACTGGAAACA 314
|||| ||||||||||||||||| ||||||||||| || ||||| |||||| |||||||||
Sbjct 260 TGGGTAAGAACACTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACTCTGGAAACA 319
Query 315 CTGCAATCCTCAATCTGCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAG 374
||||||| | ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 320 CTGCAATTTTGAATCTGCTTCCCCTCCTTCAGGGAAACGTTGGTTTGATCTTCACTAAAG 379
Query 375 GTGACCTCAAGGAAGTGAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTG 434
|||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 380 GTGATCTCAAGGAAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTG 439
Query 435 TGGGTTTGGTTGCTCCAATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCAT 494
||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 440 TGGGTTTAGTTGCTCCTATTGATGTGGTTGTTCAACCTGGCAACACTGGTCTTGACCCAT 499
Query 495 CCCAGACATCTTTCTTCCAGGTTCTTAACA-TCCCAACCAAGATTAACAAGGGGACCGTC 553
| || ||||| ||||||||||| ||||||| |||| || |||||||||||||| || ||
Sbjct 500 CTCAAACATCGTTCTTCCAGGTGCTTAACATTCCC-ACTAAGATTAACAAGGGTACTGTT 558
Query 554 GAAATCATCACCCCAGTTGAGCTTATCAAGCAAGGTGACAAGGTCGGATCTTCTGAGGCT 613
||||| |||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 559 GAAATTATCACCCCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCT 618
Query 614 GCCCTTCTAGCCAAGCTTGGCATCAGGCCTTTCTCATATGGTCTTGTTGTCCAGTCTGTG 673
||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| ||
Sbjct 619 GCCCTTCTAGCTAAGCTTGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTT 678
Query 674 TATGACAATGGCTCAGTCTTCAGCCCAGAGGTTCTTGATCTTACAGAAGACCAACTTGTT 733
||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 679 TATGATAATGGATCAGTCTTCAGTCCAGAGGTTCTTGATCTTACTGAAGATCAACTTGTT 738
Query 734 GAGAAGTTTGCTTCTGGTATCTCCATGGTCACTTCCTTGGCTCTTGCTATTTCTTATCCT 793
|| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||
Sbjct 739 GAAAAGTTTGCTTCTGGTATCTCTATGGTCACTTCCTTGGCTCTAGCTGTTTCTTACCCT 798
Query 794 ACCCTTGCTGCTGCACCGCATATGTTCATCAATGCGTACAAGAATGCCTTAGCTATTGCT 853
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 799 ACCCTTGCGGCTGCACCGCATATGTTCATCAATGCCTACAAGAATGCTTTAGCTATTGCT 858
Query 854 GTTGCCACTGAGTACACCTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTGAAGGATCCA 913
||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 859 GTTGCTACTGACTACACTTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTAAAGGATCCC 918
Query 914 AGTAAGTTTGCTGTTGCTGCAGTAGCCGTGTCTGCTGATGCAGGTGGTGGTGGTGGT--- 970
|| ||||||| ||||||||||| || |||||||| ||||||||||||||| ||| |
Sbjct 919 AGCAAGTTTGTTGTTGCTGCAGCGGCAGTGTCTGCGGATGCAGGTGGTGGTAGTGCTCAA 978
Query 971 GCTCAAGCTGCTGCTAAGGTAGAGGAGAAGAAGGAAGAGTCAGACGAAGAAGACTATGAG 1030
||| |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 979 GCTGGAGCTGCAGCTAAGGTAGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAG 1038
Query 1031 GGTGGTTTTGGTTTGTTCGATGAAGAGTAGATTTTGTCTATTAAGGTCTTACCTTTTT-- 1088
|||||||| |||||||| || ||||||||| |||||||||| ||||| ||||||||||
Sbjct 1039 GGTGGTTTCGGTTTGTTTGACGAAGAGTAGGTTTTGTCTAT-AAGGTTTTACCTTTTTTT 1097
Query 1089 GTCGTGG---AT--T-ATAA-----GTGTTGCTTCGTTTTTAGTATGT-TGGATCTCAA- 1135
|| |||| || | |||| |||||||||||||| ||||| | || |||||||
Sbjct 1098 GTGGTGGCTTATAGTTATAATCTAAGTGTTGCTTCGTTTGTAGTAAGGCTG-ATCTCAAA 1156
Query 1136 T-TTTCTTGGTTTTG-GCCAATTCAGATTT-ATGTT 1168
| ||| ||||||| | |||||||||||| |||||
Sbjct 1157 TGTTT-TTGGTTTCAAGACAATTCAGATTTTATGTT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5