BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478250
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09350.1 | Symbols: Fes1A | Fes1A | chr3:2871045-2873312 FOR... 1816 0.0
AT5G02150.1 | Symbols: Fes1C | Fes1C | chr5:424291-426079 REVER... 676 0.0
> AT3G09350.1 | Symbols: Fes1A | Fes1A | chr3:2871045-2873312 FORWARD
LENGTH=1466
Length=1466
Score = 1816 bits (983), Expect = 0.0
Identities = 1097/1152 (95%), Gaps = 7/1152 (1%)
Strand=Plus/Plus
Query 146 ATTCTTCAATGGCGAAAGACGGACCTAATTGGGACGGGTTACTTAAATGGAGTCTCTCTC 205
|||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||
Sbjct 164 ATTCTTCAATGGCGAAAGACGGACCTAATTGGGATGGTTTGCTTAAGTGGAGTCTCTCTC 223
Query 206 ACGCTGACGGGACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGG 265
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ACGCCGACGGTACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGG 283
Query 266 AGGCTATGCAATCGCAGACTGTAGATGTAGTCAAGCGCATGAAGGAGATTACATTAGTTA 325
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 284 AGGCTATGCAATCGCAGACTGTAGATGTAGTCAAACGCATGAAGGAGATTACACTAGTTA 343
Query 326 TGCAAACACCTGAACAAGTTTTGGTGGATCATGGAGTTACACCTGAAGATATTCAAGATT 385
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 344 TGCAAACACCTGAACAAGTTTTGGTGGAACATGGAGTAACACCTGAAGATATCCAAGATT 403
Query 386 TACTGGATGAGCTGCAGGAGCACGTTGAATCAATCGATATGGCTAATGATCTTCATTCAA 445
| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 404 TGCTGGATGAGCTGCAAGAGCACGTTGAATCGATCGATATGGCTAACGATCTTCATTCAA 463
Query 446 TTGGAGGCTTGGTTCCTCTTCTTGGTTTCCTTAAAAACTCTCATGCTAATATTCGGGCAA 505
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 464 TTGGAGGCTTGGTTCCTCTTCTTAGTTTCCTTAAAAACTCTCATGCTAATATTCGGGCAA 523
Query 506 AAGCTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCCAGAAGTCAGGAACTAGTTA 565
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 524 AAGCTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCCTAGAAGTCAGGAACTTGTTA 583
Query 566 TGGAAACAAATGGTTTGGAGTCATTACTCTCAAATTTCACTTCAGACACAGATATTCACG 625
||||||| |||| | |||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 584 TGGAAACCAATGCTCTGGAGTCATTGCTCTCGAATTTCACTTCAGACACTGATATTCACG 643
Query 626 CTCGAACCCAGGCCCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACCAGGAGTAA 685
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 CTCGAACCCAGGCTCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACCAGGAGTAA 703
Query 686 CTGCTTTCAAGCTTGCCAATGGTTATGCTGGCCTAAGAGATGCTTTAGCATCTGATAGTG 745
| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 704 CGGCTTTCAAGCTTGCCAATGGTTATGCTGGCCTAAGAGACGCCTTGGCATCTGATAGTG 763
Query 746 TGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATGATTCAG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATGATTCAG 823
Query 806 ACCGCAGTATTGCGACTGGACTCGGATTCCCCCGAGTGATGATGCATCTCGCCTCTAGTG 865
||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 824 ACCGCAGTATTGCCACTGGACTTGGATTCCCCCGAGTGATGATGCATCTTGCCTCTAGTG 883
Query 866 ACGATGCTGAGATCAGAGAAGCCGCTCTTCGTGGATTGCTTGAGCTTGCAAGAGAGAAAA 925
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 884 ACGATGCTGAGATCAGAGAAGCCGCTCTTCGTGGATTACTTGAGCTTTCAAGAGAGAAAA 943
Query 926 ACGATGGAAGCGGAAGTAGCAGCATAGATAAAAGCGATGAGAAACTGAGGCAGCTACTAG 985
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 ACGAT------GGAAGTAGCAGCATAGATAAAAGCGATGAGAAACTGAGGCAGCTACTAG 997
Query 986 AAGAACGGATCAAAGGAATCAGCTTGATGTCACAGGAGGATCTTGAAACGGTTAAAGAAG 1045
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 998 AAGAACGGATCAAAGGAATCACCTTGATGTCACAAGAGGATCTTGAAACGGTTAAAGAAG 1057
Query 1046 AGAGACAGCTCGTCGATTCACTGTGGAGCATTTGCTACAATGAACCTTCTTCTCTGAGAG 1105
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGAGACAGCTCGTGGATTTACTGTGGAGCATTTGCTACAATGAACCTTCTTCTCTGAGAG 1117
Query 1106 AAAAAGGGCTTCTTGTTCTTCCCGGTGAAGACGAATTACCTCCTGATGTCGCAAGCAAGC 1165
||||||| ||| | ||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1118 AAAAAGGACTTGTCGTTCTTCCCGGTGAAGACGCATTGCCTCCTGATGTCGCTAGCAAGC 1177
Query 1166 TCTTTGAGCCTCCTCTTAGAGCTTCTGCAGCAAACCGTAATGCTACTGAGAAGAAAGATG 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 TCTTTGAGCCTCCTCTTAGAGCTTCTGCAGCAAACCGTAATGCTACTGAGAAGAAAGATG 1237
Query 1226 AACCTATGAAACTACTTGGACCATAAACGAGAAATCGAAGCTAAAAGTTTTTGT-ACTTT 1284
||||||||||||||||||||||||| |||||||||| ||||||||| ||||| | |||||
Sbjct 1238 AACCTATGAAACTACTTGGACCATAGACGAGAAATCAAAGCTAAAACTTTTTATTACTTT 1297
Query 1285 TCCTTGtttttt 1296
||||||||||||
Sbjct 1298 TCCTTGTTTTTT 1309
Score = 158 bits (85), Expect = 2e-37
Identities = 128/146 (88%), Gaps = 14/146 (10%)
Strand=Plus/Plus
Query 1 AAGATTTTTTAGAATGTTGTAGTAGCTTCGCGAATAATCTCAAGGTCTTTTATAAAACCA 60
||||||||| ||||||||||||||||||||||||||||||| ||||| | | | |
Sbjct 1 AAGATTTTTAAGAATGTTGTAGTAGCTTCGCGAATAATCTC-AGGTC---T-T----CTA 51
Query 61 TAAAACCAAACTAGCGATTAGCCGACTCTTCCTCTTTTAATTATTACAAAGAC-AAGAAG 119
||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||
Sbjct 52 TAAAACCAAACTAGCGATTAGCCGACTCTTCCTCTTT-A-TTATTACAAAGACGAA-AAG 108
Query 120 GTTTCCGACTTTTGTAATTTCTTCTT 145
| ||| || |||||||||||||||||
Sbjct 109 GCTTC-GAGTTTTGTAATTTCTTCTT 133
> AT5G02150.1 | Symbols: Fes1C | Fes1C | chr5:424291-426079 REVERSE
LENGTH=1176
Length=1176
Score = 676 bits (366), Expect = 0.0
Identities = 718/883 (81%), Gaps = 43/883 (5%)
Strand=Plus/Plus
Query 149 CTTCAATGGCGAAAGACGGACCTAATTGGGACGGGT-TACTTAAATGGAGTCTCTCTCAC 207
||||||||||||||||||||||||| |||||| ||| | ||||| |||||||||||||||
Sbjct 7 CTTCAATGGCGAAAGACGGACCTAACTGGGAC-GGTCTGCTTAAGTGGAGTCTCTCTCAC 65
Query 208 GCTGACGGGACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGGAG 267
| || || |||||||| ||| |||| || |||||||||||||||||||||||| ||
Sbjct 66 TCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTGCAGAA 125
Query 268 GCTATGCAATCGCAGACTGTAGATGTAGTCAAGCGCATGAAGGAGATTACATTAGTTA-T 326
||||||||||| || || ||||||||||||||||| |||||||||||||| || || |
Sbjct 126 GCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACA-CAGGTATT 184
Query 327 GCAAACACCTGAACAAGTTTTGGTGGATCATGGAGTTACACCTGAAGATATTCAAGATTT 386
||| |||||| |||||||||||| || ||||| ||| || ||| |||||||| ||| |||
Sbjct 185 GCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAGGTTT 244
Query 387 ACTGGATGAGCTGCAGGAGCACGTTGAATCAATCGATATGGCTAATGATCTTCATTCAAT 446
|||||||| ||||||| || |||||||| || ||||||||||||||||||||||| |
Sbjct 245 GTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATTCCGT 304
Query 447 TGGAGGCTTGGTTCCTCTTCTTGGTTTCCTTAAAAACTCTC-ATGCTAATATTCGGGCAA 505
|||||||||||| ||||||||||| | ||| |||||||| | |||||||||| |||||
Sbjct 305 TGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTC-CAATGCTAATATCCGGGC-T 362
Query 506 AAG-CTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCC-CAGAAGTCAGGAACT-AG 562
||| |||| ||||| || |||||||||||| |||||||||| | | ||||| ||| | ||
Sbjct 363 AAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTC-GGAGTCAAGAA-TCAG 420
Query 563 TTATGGAAACAAATGGTTTGGAGTCATTACTCTCAA-ATTTCACTTCAGACACAGATATT 621
|||||||| | |||||||| ||||| || || | || ||| ||||||||||| |||||
Sbjct 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTTTAAGGTTT-ACTTCAGACACCGATATG 479
Query 622 CACGCTCGAACCCAGGCCCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACC-AGG 680
|| ||||||| ||||| || || ||||||||||||||||||||| |||| ||||| ||
Sbjct 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539
Query 681 AGTAACTGCTTTCAAGCTTGCCAATGGTTA-TGCTGGCCTAAGAGATGCTTTAGCATCTG 739
| | || | |||| | |||| |||||||| | |||| ||| ||||||||| | | |||
Sbjct 540 A-TCACAGGTTTCCGGATTGCAAATGGTTACT-CTGGTTTAAAAGATGCTTTGGAAACTG 597
Query 740 ATAGTGTGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATG 799
||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||
Sbjct 598 ATAGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATG 657
Query 800 ATTCAGAC-C-GCAGTATTGCGACTGGACT-CGGA-TTCCCCCGAGT-GATGATGCATCT 854
| |||||| | | | |||||| | | || | ||| ||| || | | ||||||||| ||
Sbjct 658 ACTCAGACTCCG-A-TATTGCTA-TAGAATTCGGGCTTCACC--ATTTGATGATGCACCT 712
Query 855 CGCCTCTAG-TGACGATGCTGA-GATCAGAGAAGCCGCTCTTCGTGGATTGCTTGAGCT- 911
|| ||||| | ||||||||| | | |||||||| |||||||| ||||||||||||||
Sbjct 713 CGTGTCTAGCTT-CGATGCTGATG-TAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTC 770
Query 912 -TGCAAGAGAGAAAA-AC-GATGGAAGCG-GAAGTAGC-AGCATAGATAAAAG-CGATGA 965
|| ||| |||||| || | | | | | | || | ||||||| | |||| ||||||
Sbjct 771 GTGAAAGCTAGAAAAGACTG-TAGTA-CTTGTGGTT-CTAGCATAG-TGAAAGGCGATGA 826
Query 966 GAAACTGAGGCAGCTACTAGAAGAACGGATCAAAGGAATCAGC 1008
|| ||| || ||| | ||| |||| |||||||||| |||||||
Sbjct 827 GAGACTCAGACAGATTCTAAAAGATCGGATCAAAGCAATCAGC 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5