BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478272
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09540.1 | Symbols: | Pectin lyase-like superfamily protein... 1868 0.0
> AT3G09540.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2928811-2931228 REVERSE LENGTH=1496
Length=1496
Score = 1868 bits (1011), Expect = 0.0
Identities = 1276/1396 (91%), Gaps = 49/1396 (4%)
Strand=Plus/Plus
Query 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATAC-AAAACTGAAACTGTCCGAAA 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GTTCAGTTGAAACAAAGAGCAATTATATCCCAAAAATACAAAAACTGAAACTGTCCGAAA 60
Query 60 TTAAATTCAACATTTG-T-TATAAATTAGATATGGGAAACTTACATGGCCTTCACAGATC 117
|| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTGAATTCAACATTTGTTATATAAATTAGATATGGGAAACTTACATGGCATTCACAGATC 120
Query 118 CCATCACGGCGGTTCTAATTTTCCCGGCGAATCCT-CCAATTCACCTTTCCCACCACCAT 176
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 121 CCATCACGGCGGTTCTAATTTTCCCGGCGAA-GCTCCCAATTCACCTTTCCCACCACCAT 179
Query 177 AT--A-------CA--T-CAGCTCC-G---C--CAT-----T-CGATCACCACATGGCGG 212
|| | || | ||||||| | | ||| | ||||||||||||| | |
Sbjct 180 ATACAGCCGCTCCAGCTCCAGCTCCAGCTCCGTCATCGCCATCCGATCACCACATGACAG 239
Query 213 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCTGGTAAGGCTGAGGGTT 272
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 240 TGGGACCTTATTGCCACGTAGACTCCAGCCTCCGCTCTCTCGCCGGAAAGGCCGAAGGTT 299
Query 273 TTGGCCGTGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 332
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCGGCCGCGCCGCCGTTGGTGGTCTAAATGGTCCGATTTGCCACGTCACTTCTTTAGCTG 359
Query 333 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCGTTATGGATTGTGT 392
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 360 ACGAGGGTCCAGGATCGTTGCGAGAGGCTTGCAAGAGGCCAGAACCTTTATGGATCGTGT 419
Query 393 TCGATGTGTCGGGAACGATCAATCTCTCTTCGTTTGTGAGCGTATCATCGCACACAACGG 452
||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 420 TCGATGTATCGGGAACGATCAATCTGTCTTCGTTTGTCAACGTATCATCGCACACAACGG 479
Query 453 TGGACGGAAGAGGACAAAAGGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 512
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGGACGGGAGAGGACAAAAAGTGAAGATAACGGGAAAAGGGTTAAGGCTAAAAGAGTGTG 539
Query 513 AAAACGTTATAATCTGCAACCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCCA 572
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 AAAACGTTATAATCTGCAATCTTGAATTTGAAGGCGGTGTGGGACCAGACGCAGACGCTA 599
Query 573 TTCAGATCAAACCAAAATCACACAACATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 632
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 TTCAGATCAAACCAAAATCGCACAATATTTGGATTGATCGGTGTAGTCTCAAGAATTACT 659
Query 633 ATGATGGTTTGATCGATATCACACGAGAAAGCACTGACATTACTGTCTCAAGATGCCATT 692
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 ATGATGGTTTGATTGATATCACACGAGAAAGCACTGACATCACTGTCTCAAGATGCCATT 719
Query 693 TCATAAACCACAACAAGACGATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 752
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATGAACCACAACAAAACTATGTTAATAGGAGCGGACACAAGTCACGTTACGGACCGAT 779
Query 753 GCATAAGAGTTACGATACATCACTGtttttttGACGGTACACGTCAGCGACACCCTCGCG 812
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 780 GCATAAGAGTTACGATACATCACTGCTTCTTCGACGGTACACGTCAGCGACACCCTCGCG 839
Query 813 TTCGCTTTGCAAAAGTCCATCTATTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 872
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCGCTTCGCAAAAGTCCATCTCTTCAACAACTACACTCGTCATTGGGCCATTTACGCTG 899
Query 873 TCGGTGCCGGTGTAGAATCTCAGATATATTCTCAGTGCAACATATATGAAGCTAGTGAGA 932
| ||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 900 TTGGTGCTGGTGTCGAATCTCAGATACATTCTCAGTGCAACATATATGAAGCTGGTGAAA 959
Query 933 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCGGCAGATAAAGAGAAACCCGGAGCTG 992
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 960 AGAAAACTGTCTTTAAGTACATCACTGAGAAGGCCGCTGATAAAGAGAAACCCGGAGCTG 1019
Query 993 GATTCGTAAGATCCGAAGGGGATTTGTTTTTGAACGGAGCCAAGTCGTGTCTTAGCCAGG 1052
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1020 GATTCGTAAGATCAGAAGGGGATTTGTTGTTGAACGGAGCCAAATCGTGTCTTAGTCAGG 1079
Query 1053 GCGGAGAACGCTATGTGTTCTCTCCGACCCAACACTATTCTGAGTGGACCGTCGAATCGC 1112
||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||| |
Sbjct 1080 GCGGAGAGCGCTATGTGTTCTCTCCAATCCAACACTATTCTGAATGGACCGTCGAATCTC 1139
Query 1113 CAACCGAGATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCTGAACATTCCGCTCC 1172
||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 1140 CAACCGATATACTCAAGAACTATCTGAAACACTCGACCGGCTGGCAGAACCTTCCCCTCC 1199
Query 1173 CACTAGACCAACCTCCGACAACCGGTTAACTATTG-TTAATGGAAGTGAATTAAATGGAT 1231
||||||||| |||||||| |||| ||||||||| ||| | ||||||||| | |||||
Sbjct 1200 CACTAGACCGGCCTCCGACCACCGCATAACTATTGCTTAGCG-AAGTGAATTGATTGGAT 1258
Query 1232 CACTTTTGGCAGTACCAAAATTATATCCCAGTAGTTTCTCCCGCTTCCACTTAGACAAAC 1291
||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1259 CACTTTTGGCACTACCAAAACTATATTGCAGTAGTTTCTTCCATTTCCACTTAGACAAAC 1318
Query 1292 AAA-T-A------------G---G-ATTGTCGAATTTTTCCAATTCAAAGTTGAGATTTT 1333
||| | | | | |||||||||||||||||||||||||||||||| ||
Sbjct 1319 AAAATGATATATCAAATTTGATAGGATTGTCGAATTTTTCCAATTCAAAGTTGAGATATT 1378
Query 1334 AGTTTCAACTAATAAA 1349
||||||||||||||||
Sbjct 1379 AGTTTCAACTAATAAA 1394
Score = 80.5 bits (43), Expect = 4e-14
Identities = 66/77 (86%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1350 GTTAATGTATATTTTGAGCTTATGTGCGCATGTATGGATTATCTTTAATTAGATGAATAA 1409
|||| ||| |||||||||| | ||| | ||||||| ||||||| || |||||||||||
Sbjct 1420 GTTATTGTGTATTTTGAGC-T-TGTTTGTATGTATGAATTATCTCCAACTAGATGAATAA 1477
Query 1410 CAAGTCTGTGGTGGTTG 1426
|||||||||||||||||
Sbjct 1478 CAAGTCTGTGGTGGTTG 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70280763000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5