BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478281
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09600.1 | Symbols: | Homeodomain-like superfamily protein ... 2080 0.0
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648704-651... 582 2e-165
AT5G57650.1 | Symbols: | eukaryotic translation initiation fac... 65.8 1e-09
> AT3G09600.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:2946406-2948995 FORWARD LENGTH=1402
Length=1402
Score = 2080 bits (1126), Expect = 0.0
Identities = 1278/1350 (95%), Gaps = 15/1350 (1%)
Strand=Plus/Plus
Query 1 ATCTGAAACATAACCGATGAGCTCGTCGCCGTCAAGGAATCCGACGAACGCCGAAGTACC 60
|||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||
Sbjct 38 ATCTGAAAAATAACCGATGAGCTCGTCGCCGTCAAGAAATCCAACGAACGCCGAAGCACC 97
Query 61 TCCGCCACCACCAACATCGACGGATGCGGTGGCAGAGGGTTCGTCTAAGAAAGTGAGGAA 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 98 TCCGCCACCACCAACATCGACGGATGCTGTGGCAGAGGGTTCGTCTAAGAAAGTGAGGAA 157
Query 121 ACCTTATACCATCACCAAGTCTAGGGAAAGCTGGACAGAGGAAGAGCATGATAAGTTTCT 180
||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 158 ACCATATACCATCACCAAGTCAAGAGAGAGCTGGACAGAGGAAGAGCACGATAAGTTTCT 217
Query 181 TGAAGCACTTCAACTGTTTGATCGAGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TGAAGCACTTCAACTGTTTGATCGTGACTGGAAGAAGATTGAAGATTTTGTTGGTTCAAA 277
Query 241 GACTGTGATTCAGATAAGGAGTCACGCCCAAAAATACTTTCTAAAGGTTCAGAAAAACGG 300
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 278 GACTGTGATTCAGATAAGGAGTCATGCTCAAAAATACTTTCTCAAGGTTCAGAAAAACGG 337
Query 301 GACATTAGCACATGTGCCACCTCCTCGGCCTAAGCGCAAAGCAGCTCATCCGTATCCTCA 360
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 338 GACATTAGCTCATGTGCCACCTCCTCGACCTAAGCGCAAAGCAGCTCATCCGTATCCTCA 397
Query 361 AAAGGCATCGAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTTCGCG 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 398 AAAGGCATCAAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTCTTTTACTACTACGCG 457
Query 421 AAATAGCGACATGCCGGGATTTGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGT 480
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 458 AAATGGCGACATGCCGGGATATGCTTCATGGGATGATGCCTCAATGCTGCTAAACAGAGT 517
Query 481 TATTTCACCACAACATGAACTTGCTACTCTTCGTGGAGCAGAAGCTGATATTGGATCAAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TATTTCACCACAACATGAACTTGCTACTCTTCGTGGAGCAGAAGCTGATATTGGATCAAA 577
Query 541 GGGCTTATTAAATGTTAGTAGCCCTTCTACATCTTGTATGGGAAGCTCAAGCCGAACAGT 600
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 578 GGGCTTATTAAATGTTAGTAGCCCTTCTACATCTGGCATGGGAAGCTCAAGCCGAACAGT 637
Query 601 ATCAGGTTCTGAGATTGTAAAAAAGGCGAAACAGCTTCCCGTTCTTCACGGTGTTCCTGA 660
|||||||||||||||||||| |||||| ||||||| ||| || |||||||||||||||||
Sbjct 638 ATCAGGTTCTGAGATTGTAAGAAAGGCTAAACAGCCTCCAGTGCTTCACGGTGTTCCTGA 697
Query 661 TTTTGCTGAAGTTTATAACTTCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCACGT 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 698 TTTTGCTGAAGTTTATAATTTCATTGGGAGTGTCTTTGATCCTGAAACGAGAGGCCATGT 757
Query 721 GGAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTTCTGTTATTGATGAGAAA 780
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 758 GGAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTTCTGTTATTGATGAGAAA 817
Query 781 CCTCACAGTTAACTTATCAAACCCTGATTTAGAATCCGCTAGGAAAGTCCTCTCATCATA 840
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 818 CCTCACAGTTAACTTATCAAACCCTGATTTAGAATCCACTAGGAAAGTCCTCTTATCATA 877
Query 841 TG-C--CGTGAAGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGA 897
|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGACAACGTGACGACCGAGCTCCCAAGCGTTGTTTCCCTTGTCAAGAACTCAACAAGCGA 937
Query 898 CAAATCAGCTTAACAAAAATATCAGCCATTAGCTATCAAGTTTACTCATCGGTTTTCCAT 957
||||||||| |||||||||||| |||||| ||||| ||||||||||||| ||||| ||||
Sbjct 938 CAAATCAGCATAACAAAAATATGAGCCATCAGCTAGCAAGTTTACTCATTGGTTTCCCAT 997
Query 958 GTTTAATAAACTTTGGTGTTATACGTCACTGGGAATCACAATCTTGTCAATGCATCATCA 1017
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 998 GTTTAATAAACTTTGGTGTTATACGTCACTGG-AATCACAATCGTGTCACTGCATCATCA 1056
Query 1018 TGTGGGAATTGTGTAAAAGGTCTTTGTTGTTTTGAGGAGAAACGTAAGCCAAGTTTTCGA 1077
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1057 TGTGGGAATTGTGTAAAAGGTCTTTGTTGTTTTGAGGAGAAACATAAGCCAAGTTTT-GA 1115
Query 1078 -GCTATAGGGGACTTCCGCAGATTTTGACCAGGACTAGTTGGGTGAATGGTAGGTATAAT 1136
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 AGCTATAGGGGGCTTCCGCAGATTTTGACCAGGACTAGTTGGGTGAATGGTAGGTATAAT 1175
Query 1137 ATATGTAAGGGGTTTT-CTACTAGTTGCTAGACAGCCTCTTTCTCATCCGCCGGTTACTC 1195
|||||||||||||||| ||||||||||| |||||||||| ||||||||| || |||||||
Sbjct 1176 ATATGTAAGGGGTTTTTCTACTAGTTGCAAGACAGCCTCATTCTCATCCACCCGTTACTC 1235
Query 1196 TTGTAC-AAACATCTCTTCATAT-TTTTTGTTCAGTTGTTGTGTAT--GTGTCAAGGATT 1251
|||||| ||| ||||| ||||| |||||||||||||||||||||| |||| || |||
Sbjct 1236 TTGTACTAAA-ATCTCGTCATAACTTTTTGTTCAGTTGTTGTGTATTTGTGTAAAAGAT- 1293
Query 1252 AAATCCTAGGACTGATTGTAATGGTTCAAGATCAGTGTTAAGTTATATAACGGCAACTCT 1311
|| |||||||||||| ||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1294 AAGTCCTAGGACTGAGTGTAATGGTTCAAGATCAGTGTTAAGTAA-ATGACGGCAACTCT 1352
Query 1312 AATTGTTTTGAAGTTGACAGCTTTCTCTAT 1341
| ||||||| |||||||||||||||| |||
Sbjct 1353 A-TTGTTTTAAAGTTGACAGCTTTCTTTAT 1381
> AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648704-651972
FORWARD LENGTH=1413
Length=1413
Score = 582 bits (315), Expect = 2e-165
Identities = 601/734 (82%), Gaps = 40/734 (5%)
Strand=Plus/Plus
Query 107 AAGAAAGTGAGGAAACCTTATACCATCACCAAGTCTAGGGAAAGCTGGACAG-AGGAAGA 165
||||| ||||||||| |||| || |||||||||||||| || || ||||| | ||| |||
Sbjct 196 AAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGG-AGA 254
Query 166 GCATGATAAGTTTCTTGAAGCACTTCAACTGTTTGATCGAGACTGGAAGAAGATTGAAGA 225
|| || |||||||| ||||| |||||| |||||||||| |||||||| ||||| |||||
Sbjct 255 ACACGACAAGTTTCTGGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGA 314
Query 226 TTTTGTTGGTTCAAAGACTGTGATTCAGATAAGGAGTCACGCCCAAAAATACTTTCTAAA 285
|||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||
Sbjct 315 TTTTGTTGGTTCAAAGACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAA 374
Query 286 GGTTCAGAAAAACGGGACATTAGCACATGTGCCACCTCCTCGGCCTAAGCGCAAAGCAGC 345
||| || ||||| ||||| ||||||||||| ||||| ||| |||||||||||||||| ||
Sbjct 375 GGTCCAAAAAAATGGGACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGC 434
Query 346 TCATCCGTATCCTCAAAAGGCATCGAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTC 405
|||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||| |||
Sbjct 435 TCATCCATATCCTCAAAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTC 494
Query 406 TTTTACTACTTCGCGAAAT-AGCGACATGCCGGGATTTGCTTCATGGGATGATGCCT-CA 463
||| |||| | | |||| | || |||| |||| | || |||||||||||| | ||
Sbjct 495 CTTTCCTAC-T--C-AAATAAATAACCTGCCTGGATATACTCCATGGGATGATG-ATACA 549
Query 464 -ATGC--TGCTAAACA-----G--A-----GTTATTTCACCACAACATGAACTTGCTACT 508
||| || |||||| | | |||||| ||||| || ||||||||| ||||
Sbjct 550 TCTGCATTGTTAAACATTGCTGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACT 609
Query 509 CTTCGTGGAGCAGAAGCTGATATTGGATCAAAGGGC-TTATTAAATGTTAGTAGCCCTTC 567
||| |||||||||||| |||| |||||||||| | | | | ||| || | ||| |||||
Sbjct 610 CTTTGTGGAGCAGAAGTTGATGTTGGATCAAATGACATGA-TAAGTGAAACTAGTCCTTC 668
Query 568 TA-CATCTTGTATGGGAAGCTCAAGCCGAACAGTATCAGGTTCTGA-GATTGTAAAAAAG 625
| ||||| |||| |||||||||||| ||||| |||||| |||| | | || | | | |
Sbjct 669 -AGCATCTGGTATCGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTT-TGAGACTG 726
Query 626 GCGAAAC-AGCTTCCCGTTC--TTCACGGTGTTCCTGATTTTGCTGAAGTTTATAACTTC 682
||||||| ||| |||| || | || ||| |||||||||||||||| ||||||||||||
Sbjct 727 GCGAAACAAGC-TCCC--TCAATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTC 783
Query 683 ATTGGGAGTGTCTTTGATCCTGA-AACGAGAGGCCACGTGGAAAAGCTCAAGGAAATGGA 741
||||||||||| || |||||||| | | | ||||| | || |||||||||||||||||||
Sbjct 784 ATTGGGAGTGTGTTCGATCCTGACAGC-AAAGGCCGCATGAAAAAGCTCAAGGAAATGGA 842
Query 742 TCCTATAAATTTTGAAACTGTTCTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAA 801
|||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||||
Sbjct 843 TCCTATAAATTTCGAAACTGTTTTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAA 902
Query 802 CCCTGA-TTTAGAA 814
|||||| ||| |||
Sbjct 903 CCCTGACTTT-GAA 915
> AT5G57650.1 | Symbols: | eukaryotic translation initiation factor-related
| chr5:23345797-23346285 REVERSE LENGTH=147
Length=147
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 196 GTTTGATCGAGACTGGAAGAAGATTGAAGATTTTGTTG 233
||||||||| ||||||||||||||||||||||||||||
Sbjct 24 GTTTGATCGTGACTGGAAGAAGATTGAAGATTTTGTTG 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5