BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478284
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09640.1 | Symbols: APX2, APX1B | ascorbate peroxidase 2 | c... 1243 0.0
> AT3G09640.1 | Symbols: APX2, APX1B | ascorbate peroxidase 2 |
chr3:2956156-2958327 FORWARD LENGTH=1065
Length=1065
Score = 1243 bits (673), Expect = 0.0
Identities = 782/834 (94%), Gaps = 9/834 (1%)
Strand=Plus/Plus
Query 1 AAAAATGGTGAATAAGAGTTACCCGGAAGTGAAAGAAGAGTACAAGAAAGCTGTTCAGAG 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AAAAATGGTGAAGAAGAGTTACCCGGAAGTGAAAGAAGAGTACAAGAAAGCTGTTCAGAG 201
Query 61 ATGCAAGAGGAAGCTCCGTGGTCTTATCGCCGAGAAGCACTGTGCTCCTATCGTTCTCCG 120
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 202 ATGCAAGAGGAAGCTCCGTGGTCTTATTGCCGAGAAGCACTGTGCTCCCATCGTCCTCCG 261
Query 121 TCTTGCATGGCACTCTGCTGGGACATTTGACGTGAAGACGAAGACAGGAGGACCGTTTGG 180
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 262 TCTTGCATGGCACTCGGCTGGGACATTTGATGTGAAGACGAAGACAGGAGGACCGTTTGG 321
Query 181 AACGATAAGGCATCCCCAAGAGCTAGCCCATGAGGCCAACAATGGTCTTGATATAGCAAT 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 322 GACGATAAGGCATCCCCAAGAGCTAGCCCATGATGCCAACAATGGTCTTGATATTGCCGT 381
Query 241 TAGGCTTCTTGAGCCGATCAAGGAGTTGTTCCCCATTCTGTCTTATGCTGATTTCTACCA 300
|||||||||||| || ||||||||| ||||||| |||||||| |||||||| ||||||||
Sbjct 382 TAGGCTTCTTGACCCTATCAAGGAGCTGTTCCCTATTCTGTCATATGCTGACTTCTACCA 441
Query 301 GCTAGCTGGAGTTGTTGCTGTTGAGATCACTGGAGGACCCGAGATTCCATTTCATCCTGG 360
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 442 GCTAGCTGGAGTAGTTGCTGTTGAGATCACTGGAGGACCAGAGATTCCATTTCATCCTGG 501
Query 361 TAGACTGGACAAAATTGAGCCACCTCCTGAAGGTCGTCTGCCTCAGGCCACCAAAGGCGT 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 502 TAGACTGGACAAAGTTGAGCCACCTCCTGAAGGTCGTCTGCCTCAGGCCACCAAAGGTGT 561
Query 421 GGATCATCTAAGAGATGTGTTTAGTCGGATGGGACTCAATGACAAAGATATTGTTGCATT 480
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 562 GGATCATCTAAGAGATGTGTTTGGTCGGATGGGACTCAATGACAAAGATATCGTTGCATT 621
Query 481 GTCTGGTGGACACACCTTGGGTCGGTGCCACAAGGAGCGCTCAGGATTCGAGGGAGCATG 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 622 GTCTGGTGGACACACCTTGGGTCGGTGCCACAAGGAGCGTTCAGGATTCGAGGGTGCATG 681
Query 541 GACACAAAACCCGCTCATTTTCGACAACTCCTATTTCAAAGAGATACTAAGCGGAGAGAA 600
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 682 GACACCAAACCCGCTCATTTTTGACAACTCCTATTTCAAAGAGATACTAAGCGGAGAGAA 741
Query 601 AGAAGGACTTCTTCAATTACCAACCGACAAGGCTCTTCTCGATGATCCTCTCTTTCGTCC 660
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||
Sbjct 742 AGAAGGACTTCTTCAACTACCAACCGACAAGGCTCTTCTTGATGATCCTCTCTTTC-TCC 800
Query 661 C-TTTGTTGAGAGATATGCGGCAGATGAGGATGCCTTCTTCGAAGACTATAAAGAAGCTC 719
| |||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 801 CATTTGTTGAAAAATATGCTGCAGATGAGGATGCCTTCTTCGAAGACTATACGGAAGCTC 860
Query 720 ATCTGAAGTTGTCAGAACTCGGGTTTGCTGACAAGGAGTAATATGGAATCTGGTGCCAGG 779
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 861 ATCTAAAGTTGTCAGAACTCGGGTTTGCTGACAAGGAGTAATCTGGAATCTGGTGTCATC 920
Query 780 TCCTATCCCTTGAATTTGATTCTTGTTCCTTCACATTATCGTGTTGTAATCATA 833
||||| || | || |||||||||||| ||||||||| | |||||||||||
Sbjct 921 TCCTA-CC-TCC--TT-GATTCTTGTTCCCTCACATTAT--TATTGTAATCATA 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5